Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00513 ATGACTATGAGGGCCGTTCGCCTTCTACTTCCTCTTAGACAAGTTACTGTATCGCCTTTGCCGCTGGTAGCGTTCTTCTCTTCGTTTTCATCAGTAAGCACTAAATCGACGAACTGCGTCGCCACTGATGCCAGTGATGGAGGTTTGGTGCACAGAAATTGTCTAAAATTTAAGTGGAACGCGGCTAAGTTCGTTGGTACGGTGGAACAGCCTCTTAAAGTGCATACCAGGAATGGCGACACAGTTTATGCTTGGACATTTCTTCGTGCTAAAGTCTCCCGGGATTCTAGCAGCAGTTTTAGTTTCGGCTATCATTCTGGCTATCAGAGGATTTTGCTGAAACTGTGGGAAGAAATGGCTGAATCATACATTGAACGTCTTAAACCGAATGACTTCATTTATGTTGCTGGTACTTTAGAGTCTTATAAGAAGGCTGATAAGTGCGGGAAGTCTTTTTTATCTTATGAGTTAACTGTGTCAGAGTTGAATCACATTCGACAAAATGCTCGAGGCTCAAAAAGTCAAGATTCTGTGGGCATGATACATGAAGAGGGTACTACAGGGTATGCTTGTAAGGATAAATGCAGGGAACGCCTGCATTTGTGGCAAGTGTTCTTCAGCAGTCCACATGAATGGTGGGATAACAGAAACCAAAAGCCAAATCCGAAACATCCGGACTTTAAACACAAGAGTACTGGCGAGGTCCTGTGGCTGCGGGCAACGGACCCTCCATGGATCGGAAAACAGCTCGAATTACTCGACACCAAGATGGGAAAAAAAGATGAAGATGATCATTTTGGTTCTGATTCTAGCATTGCCAAGTGGTTATCTATCTCAACGCAGGGAATCTGCGGATTAGGTGCTAAAAATGGGGACAAAAAGGGACCCAAACGAGGAGGAAACAGAGCTGCTGGTTTTATTTATGTGACTGAAGGACTGGAAAATATGGCGTTTGTGGCGTTGGCCTTGAGCTTGATGACATATTTCAGTGGATACATGAACTTCAGCTTGACAAAATCGGCCACAACTATGACCAACTTCATGGGAACTACGTTCCTTCTGACGCTCGTCGGAGGCTTTGTCTCCGACACCTTCAATTACAACACTTTTCACTTGACTTTTGTGCAGGGATATTTTCTACTATCGGCACAGGCGCATTTCCGGGAGCTAAGGCCAGAGCCGTGCAAAGGGGCGTTGGCGGGGAGTGAGTGCAAGGCGGCGAACGGCGGGCAGGAGGCGATTCTGTACGTGGGAATTTACCTGATAGCGCTGGGAGCGAGTGGGGTAAAAGTGGCGCTGCCGGCGTTGGGAGCGGATCAGTTCGAGGAGGGAGATCCGGCGGAGGCGGGGAAACTGTCGAGCTTTTTCAACTGGTTTTTGTTCAGCCTGACGACAGGGTCGACCGTGGGGTTGACATTGATAGTGTGGATAAACACGGAGGTGGGCTGGGACTGGGCGTTTGTGGTGTGCACCATCGCCGTTCTCGCCGCCATTCTTGTTGTGTGCGCCGGCAAGTCCTTCTTTCGCAATAATGTGCCCAAAGGAAGCCCCATACTTAGAATTCTACAGGTTATTGTAGCTTCAATCCATAACAGGAAACTTCCACTTCCAGAAAATGCTGATGAACTACATGAGATTCGTGACAAAGAAGCAGATATCCCAATTGAAATCCTTGAGAAAACTGATCAATTCAGATTCTTAGAACGAGCAGCAATTATAAGGAATGATACAAGAACACTATGGAGACTCTGCACAGTGACACAGGTCGAAGAGACAAAGATCCTAATTCGAATGCTCCCAATTATAGTCAGCACCATTTTCATGGCTACCTGCATGGCTCAACTCCAGACATTCTCCATTCAACAAAGCCTAACTATGGACTCCAATTTCCTAGGATTCAAAATTCCCGGCCCCTCCGTCCCCGTTATCCCCTTGCTCTTCATGTTCTTCTTCATCCCATTTTACGAGCGCGTTTTTGTTCCTCTGGCCCGTAAAATCACTGGAATTCCCACGGGAATTCGCCATCTCCAAAGGATTGGTTTCGGACTGATACTCACTGCAGCATCCATGGCCATTGCTGGGTTCGTGGAGACTCGACGCAAGAACGTAGCAATTCAACACAACATGGTGGATAGTGAGGAGCCTCTACCAATGAGTGTGTTTTGGTTGTCATTTCAGTTCTGTGTATTTGGAATGGCTGATATATTCACTATGGTAGGACTGCTGGAATTCTTTTATGCCGAGAGCTCAGCGGGGATGAAGTCGTTGAGCACAGCCATTGCTTGGTGCTCGATCGCTTTCGGCTACTTCACGAGTACGGTGGTGGTGGAGGTGGTGAACAAGGCGAGTGGAGGGTGGTTGGCGAGCAACAACCTCAACAGAGACAATTTGAACTACTTCTACTGGTTACTGTCAGTGTTGAGTGTGGTGAATTTTGGGTTTTATTTGGTTTGTGCTTCTTGGTATAGGTATAAGAATGTGGAGGTCCTTCAGAAACAAGGTGAAGAAGGGTTTGACATAGTGCAGGGGGCCTAA 2535 47.14 MTMRAVRLLLPLRQVTVSPLPLVAFFSSFSSVSTKSTNCVATDASDGGLVHRNCLKFKWNAAKFVGTVEQPLKVHTRNGDTVYAWTFLRAKVSRDSSSSFSFGYHSGYQRILLKLWEEMAESYIERLKPNDFIYVAGTLESYKKADKCGKSFLSYELTVSELNHIRQNARGSKSQDSVGMIHEEGTTGYACKDKCRERLHLWQVFFSSPHEWWDNRNQKPNPKHPDFKHKSTGEVLWLRATDPPWIGKQLELLDTKMGKKDEDDHFGSDSSIAKWLSISTQGICGLGAKNGDKKGPKRGGNRAAGFIYVTEGLENMAFVALALSLMTYFSGYMNFSLTKSATTMTNFMGTTFLLTLVGGFVSDTFNYNTFHLTFVQGYFLLSAQAHFRELRPEPCKGALAGSECKAANGGQEAILYVGIYLIALGASGVKVALPALGADQFEEGDPAEAGKLSSFFNWFLFSLTTGSTVGLTLIVWINTEVGWDWAFVVCTIAVLAAILVVCAGKSFFRNNVPKGSPILRILQVIVASIHNRKLPLPENADELHEIRDKEADIPIEILEKTDQFRFLERAAIIRNDTRTLWRLCTVTQVEETKILIRMLPIIVSTIFMATCMAQLQTFSIQQSLTMDSNFLGFKIPGPSVPVIPLLFMFFFIPFYERVFVPLARKITGIPTGIRHLQRIGFGLILTAASMAIAGFVETRRKNVAIQHNMVDSEEPLPMSVFWLSFQFCVFGMADIFTMVGLLEFFYAESSAGMKSLSTAIAWCSIAFGYFTSTVVVEVVNKASGGWLASNNLNRDNLNYFYWLLSVLSVVNFGFYLVCASWYRYKNVEVLQKQGEEGFDIVQGA 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2639066 2649350 - CmaCh12G005130.1 Cma12g00513 305003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00513 844 Pfam POT family 375 783 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cma12g00513 844 ProSiteProfiles Single-strand binding (SSB) domain profile. 59 166 IPR000424 GO:0003697
Cma12g00513 844 Gene3D MFS general substrate transporter like domains 285 831 IPR036259 -
Cma12g00513 844 SUPERFAMILY MFS general substrate transporter 298 825 IPR036259 -
Cma12g00513 844 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 293 831 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cma12g00513 844 SUPERFAMILY Nucleic acid-binding proteins 61 174 IPR012340 -
Cma12g00513 844 PANTHER PEPTIDE/NITRATE TRANSPORTER 293 831 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00513 K14638 SLC15A3_4, PHT; solute carrier family 15 (peptide/histidine transporter), member 3/4 - csv:101219370 863.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01352 Cma-Chr3:8623499 Cma12g00513 Cma-Chr12:2639066 1.22E-162 dispersed
Cma12g00513 Cma-Chr12:2639066 Cma12g00865 Cma-Chr12:6440362 6.57E-158 dispersed
Cma17g01214 Cma-Chr17:8385674 Cma12g00513 Cma-Chr12:2639066 4.72E-26 dispersed
Cma12g00513 Cma-Chr12:2639066 Cma07g00154 Cma-Chr7:786060 2.62E-165 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g832 . . . . . . . . . Cmo12g00454 . . . Car12g00483 . . Cpe07g00456 Bhi04g00300 . . . . . Lcy13g2023 Cla08g01532 Cam08g2025 Cec08g1599 Cco08g1735 Clacu08g1713 . Cre08g1494 . . . Cone20ag0168 . . . Cme03g01997 . . . . . . . . . . . Cma12g00513 . . . . . . . . . . . . . . . . . . . Lsi08g01434 Csa02g02006 Chy03g01503 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007975 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 11 1 1 1 1 1 1 0 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00513 Cma_Chr12 FPKM 3.421019 3.221766 6.344209 5.593332 2.160251 2.150392 1.98458 8.91695 8.385344 9.178978