Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00514 ATGCCTTTCTTTCACAAAAGCGCTTCGAATTCTCGGCTTCAACAGAAAGCACCAGATTCTGTTCTCTCCGTTGGTCCACCGGAGCCGCTTGCTCAGCGTCGGCTTACCAGGCAGAGGAAGCTCCGGCATCTTACGGATCGAGACATTCGCTTTGAACAACCTCGATCGTTTCCTGATTCTCCCGATTTATTGTCAAAATCTAAGACAGGTCTTGGAGGTTCCGAACGTTGGTCCTCCATTGCTTTGCCGCAGCCTTTACCTCTGCCAGAGTTCTTTCCGATTCGAAATCCAGAGTCAGGTTCTTGGAGTTCTGGACTAGGTCGCGGTGGATCGCCTTTCGAAACTCCGGTCGGGAAGAGCGCCGATCACGCAACAGCGAAGAGTAGAAGTTCCGGCAACAATCAAAGGCGAATCGCTACAGATTTAGCCTTGGAAGTTGCTAACGGACATACAGGAGGAACTCAACCTGTAAATTTAGGGAAATCGAATTTGATTAAGGATTTTGTTTTTAGTTGTTTGGATCAGCATCCAAACAACAAAGCCAGGGGTTCCCCAACTCATCCGAGTGTTGAAAGGGGTAACTACAAAGTGAAACAGAAGATTTCGACGTCGAAGAGTGCGCCGACGAGCATCTTTCCGAGTCCTGCCGTTAGCCCGCGAAGATCATGTACAGGAGATCCTTTTGTTTCTGGTTTGACTCGCCATGAACATCAGGAATCTCCTTCCAATAATTCTCCCAAAGTACCATCCCTTAAAACTCCAAATAGTTCTCAACCTTCTCCTCTCCAAAGCCCGGCAGCTATAAGCAATCCCAGATCTTCTAATGATACGCCATTTCCTCTGCATCATAAGTTACAAAAGAATCATAGTATAGGTCATGTCAATGCCCATCCATTGCCTCTTCCTCCTCCATTAGTAGCCTCGTCACAATCGTCTCCGCAATCTCTTCCCTCGAAAGAGAAACCATACATTTCATCTGTGAAAGGTCAATGGCAAAAGGGAAAGCTTATTGGACGTGGTACGTTTGGAAGCGTTTATCTCGCAACGAACAGTGAGACTGGAGCTTTATGTGCAATGAAAGAAGTTGACCTCATTCCTGATGATCCTAAATGTGCTGAAAGTATAAAGCAACTAGAGCAGGAAATTAAAGTTCTTAGTCAACTTAAACATCCAAATATTGTACAGTATTATGGAAGTGAAATAATTGGGGATCATTTCTACATATATTTGGAGTATGTTTTTCCTGGGTCAATAAATAAATTTGTCCGCGAACGTTGTGGAACCATTACAGAATCTATCGTTCGCAATTTCACCCGACATATTCTCTCTGGACTCGCTTACTTGCATAGCACAAAAACGATCCACAGGGATATCAAAGGTGCAAACTTGCTAGTTGATTCATCAGGCGTCGTCAAACTTGCAGATTTCGGGATGGCGAAACATCTGACAGGGCAGTACGATCTTTCGTTGAAGGGTAGTCCGTACTGGATGGCTCCAGAGGTCATAAAGGCTGTTATGTTGAAAGATGCCAACCCTGATCATGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCACCATAATTGAAATGCTGAATGGAAAACCTCCATGGAGTGAGTTTGAAGGGCATCAAGTTATGTTCAAGGTGTTGAATAAAGCCCCTCCTATTCCAGAAAAGCTATCTCCAGAAGGGAAAGATTTCCTCCAGTGTTGCTTCCAAAGGAATCCAGCTGACAGATCAACAGCAACGATGCTCCTTGACCATCCTTTCATAAGATCCTCAATCGACTCAACCATTTCAGTCCCGACATCAGCATTTTCGACGATGAACCTTGTGGTATTGAATCCTCAAGATCTCGTTCCTCCCAAAGGAGATCAGGTGCAAAAATCTCCTGGAACATCAGCTGCAAATGGTTATCTTCCATGCCGTAGCCCTTCAGCGAACATTCCGAGCAATATTCCTGCCAGTGCCGTTAATAACCATCACTTTTCTATCTCAAGGACTCATAAAAGGGAAGTACCACACCTCTGA 2031 44.95 MPFFHKSASNSRLQQKAPDSVLSVGPPEPLAQRRLTRQRKLRHLTDRDIRFEQPRSFPDSPDLLSKSKTGLGGSERWSSIALPQPLPLPEFFPIRNPESGSWSSGLGRGGSPFETPVGKSADHATAKSRSSGNNQRRIATDLALEVANGHTGGTQPVNLGKSNLIKDFVFSCLDQHPNNKARGSPTHPSVERGNYKVKQKISTSKSAPTSIFPSPAVSPRRSCTGDPFVSGLTRHEHQESPSNNSPKVPSLKTPNSSQPSPLQSPAAISNPRSSNDTPFPLHHKLQKNHSIGHVNAHPLPLPPPLVASSQSSPQSLPSKEKPYISSVKGQWQKGKLIGRGTFGSVYLATNSETGALCAMKEVDLIPDDPKCAESIKQLEQEIKVLSQLKHPNIVQYYGSEIIGDHFYIYLEYVFPGSINKFVRERCGTITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPYWMAPEVIKAVMLKDANPDHALAVDIWSLGCTIIEMLNGKPPWSEFEGHQVMFKVLNKAPPIPEKLSPEGKDFLQCCFQRNPADRSTATMLLDHPFIRSSIDSTISVPTSAFSTMNLVVLNPQDLVPPKGDQVQKSPGTSAANGYLPCRSPSANIPSNIPASAVNNHHFSISRTHKREVPHL 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2651023 2655807 + CmaCh12G005140.1 Cma12g00514 305004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00514 676 MobiDBLite consensus disorder prediction 176 323 - -
Cma12g00514 676 MobiDBLite consensus disorder prediction 235 281 - -
Cma12g00514 676 MobiDBLite consensus disorder prediction 622 641 - -
Cma12g00514 676 MobiDBLite consensus disorder prediction 196 217 - -
Cma12g00514 676 MobiDBLite consensus disorder prediction 99 136 - -
Cma12g00514 676 SUPERFAMILY Protein kinase-like (PK-like) 326 608 IPR011009 -
Cma12g00514 676 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Cma12g00514 676 MobiDBLite consensus disorder prediction 1 78 - -
Cma12g00514 676 ProSiteProfiles Protein kinase domain profile. 331 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00514 676 Gene3D Transferase(Phosphotransferase) domain 1 328 612 - -
Cma12g00514 676 MobiDBLite consensus disorder prediction 627 641 - -
Cma12g00514 676 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 666 - -
Cma12g00514 676 MobiDBLite consensus disorder prediction 41 55 - -
Cma12g00514 676 PANTHER - 1 666 - -
Cma12g00514 676 Pfam Protein kinase domain 332 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00514 676 SMART serkin_6 331 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00206 Cma12g00514 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00514 Cma-Chr12:2651023 Cma16g00114 Cma-Chr16:522963 1.12E-107 dispersed
Cma12g00514 Cma-Chr12:2651023 Cma03g00991 Cma-Chr3:6986502 3.28E-156 wgd
Cma12g00514 Cma-Chr12:2651023 Cma05g00206 Cma-Chr5:874311 0 wgd
Cma12g00514 Cma-Chr12:2651023 Cma07g00720 Cma-Chr7:3172737 6.35E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68951 PF00069 Pkinase 2.20E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00514 - - cmo:103487921 1028.85