Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00516 ATGAAGGCAAAGGAGAAGCCATCGAGCTCGAAATCCCCCCCTCCGCTCGCCCTGCTTTTCTTTCCTAGCCTTCTCAATGTCGTCCGCCCTTCTCTTTCAGGCCAAGCATCTGCAACTCACAAGTTTCGAGCACCGAGCTTCTGGAAGAAGTACAACAAGGGGATTGGTGATAATTTTTGGAGGAAATTTGAAGATATAATGCGTTCGACACCCAAACAGCCTCTCTTTTGCTTCAAATGGCCATGGGACATAAACCCTAAAAATCCTTCTGACTGTTCATTTGAGGGTCCTTGGCTGTTCAAATCACTGCAAAATGTGGGTGTCTTTGCTTCCAATTTCTTAAACGAAGTTTCAAAGTCATCACCTCCATGGGTCAATGCTTTCAAGCCATTGTCGTTTGATGGAAATAAGATATCTAAGTCTAGAAAAAAGCTAAGTCCTGAAGAGCAAGGAGAGGCAGAAAATAGGGCATTTGCAGCAGCATTAGCCTGTGGGAAAGAAGCCACCGTCATTGAGTTCTACTCGCCTAAATGTCCCCTTTGCAGTTCATTGCTTGGTTTTGTTACGCAGATGGAGGCAAGGAATTCACAATGGCTTAACATTGTGATGGCTGATGCAGAGAATGATAAATGGCTGCCTGAGATTCTTCATTATGATATTAGTTATGTTCCTTGCTTCGTGATTTTGGACAAACAAGGCAAGGCGCTAGCAAAGACGGGTATTCCGAGCAGTCGGCTTCATGTAATTGCAGGACTTTCTCATCTTCTCAAACTGAAGCGCCCGACAACACTCCCTGGATCAGATAACAAGCAGCAGCCACCATGTTGA 828 45.05 MKAKEKPSSSKSPPPLALLFFPSLLNVVRPSLSGQASATHKFRAPSFWKKYNKGIGDNFWRKFEDIMRSTPKQPLFCFKWPWDINPKNPSDCSFEGPWLFKSLQNVGVFASNFLNEVSKSSPPWVNAFKPLSFDGNKISKSRKKLSPEEQGEAENRAFAAALACGKEATVIEFYSPKCPLCSSLLGFVTQMEARNSQWLNIVMADAENDKWLPEILHYDISYVPCFVILDKQGKALAKTGIPSSRLHVIAGLSHLLKLKRPTTLPGSDNKQQPPC 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2658060 2661139 - CmaCh12G005160.1 Cma12g00516 305006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00516 275 SUPERFAMILY Thioredoxin-like 161 237 IPR036249 -
Cma12g00516 275 Gene3D Glutaredoxin 143 250 - -
Cma12g00516 275 Pfam Thioredoxin 154 237 IPR013766 -
Cma12g00516 275 PANTHER EXPRESSED PROTEIN 67 262 - -
Cma12g00516 275 PANTHER THIOREDOXIN, MITOCHONDRIAL 67 262 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00516 - - - mcha:111014082 338.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01018 Cma-Chr3:7116288 Cma12g00516 Cma-Chr12:2658060 9.96E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g823 . . . . . . . . . Cmo12g00456 . . . . . . Cpe07g00459 Bhi04g00309 . . . . . . Cla08g01537 Cam08g2033 Cec08g1608 Cco08g1743 Clacu08g1720 . Cre08g1503 . . Cone17ag1299 Cone20ag0171 . . . Cme03g02005 . . Bda08g01324 . . Bpe05g00066 . Bma05g00098 . . . Cma12g00516 . . . . . . . . . . . . . . . . . . . Lsi08g01442 Csa02g01999 Chy03g01510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009286 1 3 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00516 Cma_Chr12 FPKM 6.646186 8.865581 6.518677 6.537859 14.645576 13.063246 15.627814 9.250887 8.732886 9.048436