Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00518 ATGCCATCCAACGGCCCTGATTCGCAGTCGCAGCAGCAGCAGTCTGCACATCATACAGAGCAGAATCAGCAACCGCACAAACAACCGCAACCGCATCCGCAGCCGCCACCGCAGTGGTGGATGGCGATGCAGTATCAAGCGGCGCCGATGATAATGCATGATCCGATGATGCCGCCGCAGCATTACATGCCTCTATCTTCACCGCACCGTATTCCTTACGGTCGACCGCCGCATCAGGTTAACGGCCAGCAGCACCAGCAGCCGGCCCACCAGGAATCCACCAGCGAGAACAAGACTATTTGGGTCGGCGATTTGCAGCATTGGATGGACGAGAATTACCTCCATAGCTGTTTCGCTTCCACCGGCGAGGTTTCTTCCATTAAAGTCATTCGTAATAAGCAAACTGGTATATCTGAAGGCTATGGATTTGTAGAATTTTTATCTCATACAACAGCAGAGAAAGTTCTGCATAATTATTCTACAGTTTTGATGCCTAATACCGAGCTTACTTTCCGGTTAAATTGGGCAACATCTAGCACGGGTGACAAGCGTTCAGAAAAGGGTTCTGATCTTTCTATTTTTGTCGGAGATTTAGCAGCAGATGTTACCGATAGTATACTACAGGAAACTTTTGCTAGTAAATATTCATCTGTCAAAGCAGCAAAAGTTGTCTATGATCCAAATACTGGTTGTTCAAAAGGTTATGGTTTTGTGAGGTTTGGTGATGATAACGAGAGGTCTCAGGCCATGACTGACATGAACGGCGTATATTGCTCAAGCAGGCCTATGCGCATTGGTGCAGCAACGCCCAAAAAGTCCTCTGGATATCAGCATCAATATTCTTCACAAGGATATGGATCAAATGGCTCATTCACCCATGGACACCAGTCTGATGGAGATTCTACTAATACAACTATTTTCATTGGAGGGCTTGATCCGAATGTTACGGACGACGATCTTAGGCAACTATTTTCTCAGCATGGTGACATTGTATCTGTTAAGATACCAATTGGAAAAGGTTGTGGATTTATTCAGTTTGCAAACAGAAAGAATGCTGAGGAGGCATTGCAGAAATTAAATGGAACTGAAATTGGCAAGCAAACAGTACGTCTTTCTTGGGGGCGCAGTCCTGCGAATAAGCAGCACCGAGCTGATTATAGCAACCAGTGGAGTGGAGCCGCCTACTATGGAGGGCAGATGTATGGGGGATATGGATACGCAATGCCGTTACCTTATGATCCACCAACCATGTATGCTGCAGCATCATATGGAGCTTACCCTATGTTCAACTTTGTTCGCGAGGTTTTCTATAAATCCCTCCACCATGGAGCGAAACCGAATTTTGATGGACCGGGTTATGTAGAATATGATCTACTAACTATTCGTTTGAGACTGCTAGAACTAATAAGACATTATCACATAGATAAGATTCCGATTGTTGTTATGTCCTTGTCTCCTTGTCCTGTTCTTTTGCTTTGTTTTGGGAGTACTTTTGAATGTAAAGAGAGTCGCCGCCGGGCAGGGCGGGAAGATTCTGAGCTGGCATGTGTTCCAATTACGGGACGCACTACAACCCAAGTCTTTCATCTCCGATCAACACGTTTCCCCATGGCTCCAGTCTCTCTCTCTTTGCTCTCTCATTCGCCTTCAGTTCTTCTTCTTCCTTCTCCTAGTCTGCAACTCTCTCGCCCAATTTTACTTCCTCCTAGAACGCTCCCTTCATGTTCCTCCACTTTAATTTCTTCTGCTTCGATTACGTCTTCCTCGATTTCGCCGCCGAAAGTTGTTGTTACCAGAGAGCGCGGCAAGAATGGGAAGCTCGTTAGTGCTCTGGCAAAACATGGAGTAAACTGTTTGGAGCTTCCCCTCATTCAACACAGACAAGGACCTGACTTGAATAGGCTACAGTCTGTACTTTGTGATTCTGTGTTTGACTGGATTGTTATAACATCCCCTGAAGCTGGCTTGGTGTTCCTAGAGGCATGGAAGGCCGCTGGAATGCCAAAAGTCAGAATAGGTGTTGTGGGAGCTGGTACAGCTAACATTTTTGAGGAAGTGTTGCAATCGTCAAAACAACTTGATGTGGCGTTTGCACCTTCAAAGGCAATAGGCAAGGTCTTGGCTTACGAGCTTCCAAAATTAGGGAATACGAAGTGCAGTGTCTTGTATCCTGCTTCCACTAAAGCAAGCAACGATATCGAGGAGGGTCTTGCAAATCGTGGATTTGAGGTCACGAGGCTTAATACATACACTACGGCACCCGTTGATTATGTCGATCAATCCATTCTCGAGCAAGCACTTCTGTTGCCTGTTGTCACTGTGGCTTCACCTTCTGCAGTTCGCGCATGGATCAATCTTATATCAGAGCCAAAGGAGTGGGAAAATTCACTTGCCTGTATTGGGGAAACAACTGCAGCAGTAGCAAAAAGATTAGGATTGAAAAACGTTTACTACCCGAAGAATCCTGGCCTTAAAGGGTGGGTTGATAGTATATTGGAAGCAGTAAGAGCAGAAGCACAAGTCGTTTAG 2529 45.83 MPSNGPDSQSQQQQSAHHTEQNQQPHKQPQPHPQPPPQWWMAMQYQAAPMIMHDPMMPPQHYMPLSSPHRIPYGRPPHQVNGQQHQQPAHQESTSENKTIWVGDLQHWMDENYLHSCFASTGEVSSIKVIRNKQTGISEGYGFVEFLSHTTAEKVLHNYSTVLMPNTELTFRLNWATSSTGDKRSEKGSDLSIFVGDLAADVTDSILQETFASKYSSVKAAKVVYDPNTGCSKGYGFVRFGDDNERSQAMTDMNGVYCSSRPMRIGAATPKKSSGYQHQYSSQGYGSNGSFTHGHQSDGDSTNTTIFIGGLDPNVTDDDLRQLFSQHGDIVSVKIPIGKGCGFIQFANRKNAEEALQKLNGTEIGKQTVRLSWGRSPANKQHRADYSNQWSGAAYYGGQMYGGYGYAMPLPYDPPTMYAAASYGAYPMFNFVREVFYKSLHHGAKPNFDGPGYVEYDLLTIRLRLLELIRHYHIDKIPIVVMSLSPCPVLLLCFGSTFECKESRRRAGREDSELACVPITGRTTTQVFHLRSTRFPMAPVSLSLLSHSPSVLLLPSPSLQLSRPILLPPRTLPSCSSTLISSASITSSSISPPKVVVTRERGKNGKLVSALAKHGVNCLELPLIQHRQGPDLNRLQSVLCDSVFDWIVITSPEAGLVFLEAWKAAGMPKVRIGVVGAGTANIFEEVLQSSKQLDVAFAPSKAIGKVLAYELPKLGNTKCSVLYPASTKASNDIEEGLANRGFEVTRLNTYTTAPVDYVDQSILEQALLLPVVTVASPSAVRAWINLISEPKEWENSLACIGETTAAVAKRLGLKNVYYPKNPGLKGWVDSILEAVRAEAQVV 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2676295 2687841 - CmaCh12G005180.1 Cma12g00518 305008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00518 842 SUPERFAMILY RNA-binding domain, RBD 77 165 IPR035979 GO:0003676
Cma12g00518 842 Gene3D - 641 744 IPR036108 GO:0004852|GO:0033014
Cma12g00518 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 262 IPR000504 GO:0003723
Cma12g00518 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 369 IPR000504 GO:0003723
Cma12g00518 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 169 IPR000504 GO:0003723
Cma12g00518 842 MobiDBLite consensus disorder prediction 61 95 - -
Cma12g00518 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 270 IPR000504 GO:0003723
Cma12g00518 842 Pfam Uroporphyrinogen-III synthase HemD 606 828 IPR003754 GO:0004852|GO:0033014
Cma12g00518 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 376 IPR000504 GO:0003723
Cma12g00518 842 MobiDBLite consensus disorder prediction 79 95 - -
Cma12g00518 842 MobiDBLite consensus disorder prediction 1 38 - -
Cma12g00518 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 178 IPR000504 GO:0003723
Cma12g00518 842 SUPERFAMILY RNA-binding domain, RBD 181 296 IPR035979 GO:0003676
Cma12g00518 842 Gene3D - 745 836 IPR036108 GO:0004852|GO:0033014
Cma12g00518 842 CDD RRM3_NGR1_NAM8_like 303 374 - -
Cma12g00518 842 SUPERFAMILY HemD-like 594 833 IPR036108 GO:0004852|GO:0033014
Cma12g00518 842 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 33 430 - -
Cma12g00518 842 SMART rrm1_1 305 372 IPR000504 GO:0003723
Cma12g00518 842 SMART rrm1_1 192 266 IPR000504 GO:0003723
Cma12g00518 842 SMART rrm1_1 99 172 IPR000504 GO:0003723
Cma12g00518 842 Gene3D - 297 407 IPR012677 -
Cma12g00518 842 Gene3D - 178 296 IPR012677 -
Cma12g00518 842 MobiDBLite consensus disorder prediction 1 27 - -
Cma12g00518 842 CDD HemD 595 831 IPR003754 GO:0004852|GO:0033014
Cma12g00518 842 Gene3D - 97 177 IPR012677 -
Cma12g00518 842 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 33 430 - -
Cma12g00518 842 CDD RRM2_SECp43_like 190 269 - -
Cma12g00518 842 CDD RRM1_SECp43_like 99 179 - -
Cma12g00518 842 SUPERFAMILY RNA-binding domain, RBD 297 405 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00518 - - - csv:101204014 699.123
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma09g00213 Cma12g00518 CCT
Cma01g01860 Cma12g00518 CCT
Cma09g00213 Cma12g00518 ECH
Cma01g01860 Cma12g00518 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00518 Cma-Chr12:2676295 Cma15g01121 Cma-Chr15:7143923 1.58E-127 dispersed
Cma01g01860 Cma-Chr1:12230755 Cma12g00518 Cma-Chr12:2676295 7.74E-173 wgd
Cma12g00518 Cma-Chr12:2676295 Cma02g00443 Cma-Chr2:2254923 1.72E-144 wgd
Cma12g00518 Cma-Chr12:2676295 Cma20g00892 Cma-Chr20:4287687 2.62E-150 wgd
Cma12g00518 Cma-Chr12:2676295 Cma05g00204 Cma-Chr5:862353 2.72E-171 wgd
Cma12g00518 Cma-Chr12:2676295 Cma09g00213 Cma-Chr9:904988 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00518 Cma_Chr12 FPKM 18.18568 20.360029 25.745878 24.410065 37.025051 38.112083 36.970024 33.096714 31.820868 32.101604