Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00527 ATGGGAGTCGCTAATCTCTCATACGAGGAATGTCGTCGTAAGAGAGTCGAAGAAAACAAGAAGAGAATGGATGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGATTCTTCTCCTTCCAAATCCAAATCCAAATCGTCCCCTAGTAAACAGGCCAAGCATCGTGAGATGAAGAAACAACTGGTGGTAGTGAGGAGATCCAGTCGCGTAACAAAACAACCAGGGCCTGTTTACGCTGAAGTTCTTGTCAATCGCGTGGCTTTTCCTAAAAGATTCTCCAGCGCAAGAGATTATCCAGACCATTTTTTTGCTTCGGATGAAGCAAGAAAAAATGCGTTTGAAAGAGCTGAGAGATTACAATCTGTATTGGAGCCAAATTATCCCAACTTTATAAAGTCAATGGTTCGGTCTCATGTTAGCGGTTGTTTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGGAGCACCTACCAACCAATGATGGAGTAATGACTTTAATAGATGAAGGTGGCGATGAGTATCCAATAATATATTTGGCGCGAAAGACAGGGTTTAGTGGAGGATGGAAGGGTTTTTCAGTTGCTCATAAATTGGCAGATGGGGATGCTGTGATTTTTCAACTCATTAAACCTACAACCTGCAAGGTGTACATCTTTCGAGTTGGTGACTCGAAAGAAGATAGCGATTCTAACAGTAGCTAA 702 43.02 MGVANLSYEECRRKRVEENKKRMDALNLPLLSQALLDSSPSKSKSKSSPSKQAKHREMKKQLVVVRRSSRVTKQPGPVYAEVLVNRVAFPKRFSSARDYPDHFFASDEARKNAFERAERLQSVLEPNYPNFIKSMVRSHVSGCFWLGLPSHFCKEHLPTNDGVMTLIDEGGDEYPIIYLARKTGFSGGWKGFSVAHKLADGDAVIFQLIKPTTCKVYIFRVGDSKEDSDSNSS 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2734249 2736997 + CmaCh12G005270.1 Cma12g00527 305017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00527 233 Gene3D - 105 223 IPR015300 -
Cma12g00527 233 MobiDBLite consensus disorder prediction 34 61 - -
Cma12g00527 233 SUPERFAMILY DNA-binding pseudobarrel domain 124 221 IPR015300 -
Cma12g00527 233 CDD B3_DNA 129 220 IPR003340 GO:0003677
Cma12g00527 233 SMART B3_2 131 222 IPR003340 GO:0003677
Cma12g00527 233 ProSiteProfiles B3 DNA-binding domain profile. 131 222 IPR003340 GO:0003677
Cma12g00527 233 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 225 IPR044837 -
Cma12g00527 233 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 5 225 - -
Cma12g00527 233 Pfam B3 DNA binding domain 131 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00497 Cma-Chr4:2552020 Cma12g00527 Cma-Chr12:2734249 3.58E-37 dispersed
Cma12g00527 Cma-Chr12:2734249 Cma19g00610 Cma-Chr19:6650761 2.89E-64 dispersed
Cma12g00527 Cma-Chr12:2734249 Cma12g00528 Cma-Chr12:2739439 4.92E-117 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35993 PF02362 B3 2.30E-13 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00527 - - csv:101205473 342.428