Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00527 | ATGGGAGTCGCTAATCTCTCATACGAGGAATGTCGTCGTAAGAGAGTCGAAGAAAACAAGAAGAGAATGGATGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGATTCTTCTCCTTCCAAATCCAAATCCAAATCGTCCCCTAGTAAACAGGCCAAGCATCGTGAGATGAAGAAACAACTGGTGGTAGTGAGGAGATCCAGTCGCGTAACAAAACAACCAGGGCCTGTTTACGCTGAAGTTCTTGTCAATCGCGTGGCTTTTCCTAAAAGATTCTCCAGCGCAAGAGATTATCCAGACCATTTTTTTGCTTCGGATGAAGCAAGAAAAAATGCGTTTGAAAGAGCTGAGAGATTACAATCTGTATTGGAGCCAAATTATCCCAACTTTATAAAGTCAATGGTTCGGTCTCATGTTAGCGGTTGTTTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGGAGCACCTACCAACCAATGATGGAGTAATGACTTTAATAGATGAAGGTGGCGATGAGTATCCAATAATATATTTGGCGCGAAAGACAGGGTTTAGTGGAGGATGGAAGGGTTTTTCAGTTGCTCATAAATTGGCAGATGGGGATGCTGTGATTTTTCAACTCATTAAACCTACAACCTGCAAGGTGTACATCTTTCGAGTTGGTGACTCGAAAGAAGATAGCGATTCTAACAGTAGCTAA | 702 | 43.02 | MGVANLSYEECRRKRVEENKKRMDALNLPLLSQALLDSSPSKSKSKSSPSKQAKHREMKKQLVVVRRSSRVTKQPGPVYAEVLVNRVAFPKRFSSARDYPDHFFASDEARKNAFERAERLQSVLEPNYPNFIKSMVRSHVSGCFWLGLPSHFCKEHLPTNDGVMTLIDEGGDEYPIIYLARKTGFSGGWKGFSVAHKLADGDAVIFQLIKPTTCKVYIFRVGDSKEDSDSNSS | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2734249 | 2736997 | + | CmaCh12G005270.1 | Cma12g00527 | 305017 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00527 | 233 | Gene3D | - | 105 | 223 | IPR015300 | - | |
Cma12g00527 | 233 | MobiDBLite | consensus disorder prediction | 34 | 61 | - | - | |
Cma12g00527 | 233 | SUPERFAMILY | DNA-binding pseudobarrel domain | 124 | 221 | IPR015300 | - | |
Cma12g00527 | 233 | CDD | B3_DNA | 129 | 220 | IPR003340 | GO:0003677 | |
Cma12g00527 | 233 | SMART | B3_2 | 131 | 222 | IPR003340 | GO:0003677 | |
Cma12g00527 | 233 | ProSiteProfiles | B3 DNA-binding domain profile. | 131 | 222 | IPR003340 | GO:0003677 | |
Cma12g00527 | 233 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 5 | 225 | IPR044837 | - | |
Cma12g00527 | 233 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 | 5 | 225 | - | - | |
Cma12g00527 | 233 | Pfam | B3 DNA binding domain | 131 | 220 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00497 | Cma-Chr4:2552020 | Cma12g00527 | Cma-Chr12:2734249 | 3.58E-37 | dispersed | |
Cma12g00527 | Cma-Chr12:2734249 | Cma19g00610 | Cma-Chr19:6650761 | 2.89E-64 | dispersed | |
Cma12g00527 | Cma-Chr12:2734249 | Cma12g00528 | Cma-Chr12:2739439 | 4.92E-117 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35993 | PF02362 | B3 | 2.30E-13 | CL0405 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00527 | - | - | csv:101205473 | 342.428 |