Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00528 | ATGGGGATCGCTAATCTCTCATACGAAGAATGTCGCCATAAGAGAGTCCAAGAAAACAAGAAGCGGATGGAAGCCCTAAATTTGCCTTTGCTTTCTCAAGCTCTCCTCCATTCTTCCCCTTCCAAATCATCGCCTAGTAAGCTCGCCAAGCCTCGCGTGACGCAGAAACAACTCGTTGTTGTGAGGAGATCCAGTCGCATAGCGAAACAATCTGCCCCCGTTTACGCCGAAGTTGTTGTAAATCGTGTGGTGATTCCTAGAAGGATCTCCAATGCTAGAGATCTTTCAAATCGAATTTATTCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCTGGGCGATTACAATCTGGATTAGAGACAAATTATCCCAACTTTATAAGGTCGATGCTTCCATCTCATGTTAGTGGTGGATTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGACGCACCTTCCAAATCGCGATGGAATTGTGACATTAATAGATGAAGATGGAGATGAGTATCCAACAGTATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAGGGCTTTTCAGTTGCTCATAAATTGGCAGATGGGGATGCTGTGATTTTTCAATTCATTAAACCTACAACGTGCAAGGTGATTGTTTTCCGTTCAAGCAAGATGTTGCCGGGTGGAACGTGCACATAA | 684 | 44.15 | MGIANLSYEECRHKRVQENKKRMEALNLPLLSQALLHSSPSKSSPSKLAKPRVTQKQLVVVRRSSRIAKQSAPVYAEVVVNRVVIPRRISNARDLSNRIYSSDEARKNAFERAGRLQSGLETNYPNFIRSMLPSHVSGGFWLGLPSHFCKTHLPNRDGIVTLIDEDGDEYPTVYLARKTGLSGGWKGFSVAHKLADGDAVIFQFIKPTTCKVIVFRSSKMLPGGTCT | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2739439 | 2741748 | + | CmaCh12G005280.1 | Cma12g00528 | 305018 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00528 | 227 | SUPERFAMILY | DNA-binding pseudobarrel domain | 121 | 218 | IPR015300 | - | |
Cma12g00528 | 227 | SMART | B3_2 | 127 | 218 | IPR003340 | GO:0003677 | |
Cma12g00528 | 227 | CDD | B3_DNA | 125 | 216 | IPR003340 | GO:0003677 | |
Cma12g00528 | 227 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 2 | 222 | IPR044837 | - | |
Cma12g00528 | 227 | Gene3D | - | 102 | 219 | IPR015300 | - | |
Cma12g00528 | 227 | ProSiteProfiles | B3 DNA-binding domain profile. | 127 | 218 | IPR003340 | GO:0003677 | |
Cma12g00528 | 227 | Pfam | B3 DNA binding domain | 127 | 216 | IPR003340 | GO:0003677 | |
Cma12g00528 | 227 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN | 2 | 222 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01757 | Cma-Chr11:11718981 | Cma12g00528 | Cma-Chr12:2739439 | 7.52E-75 | dispersed | |
Cma12g00528 | Cma-Chr12:2739439 | Cma19g00610 | Cma-Chr19:6650761 | 5.75E-71 | dispersed | |
Cma12g00527 | Cma-Chr12:2734249 | Cma12g00528 | Cma-Chr12:2739439 | 4.92E-117 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35994 | PF02362 | B3 | 4.70E-13 | CL0405 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00528 | - | - | csv:101205473 | 352.443 |