Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00528 ATGGGGATCGCTAATCTCTCATACGAAGAATGTCGCCATAAGAGAGTCCAAGAAAACAAGAAGCGGATGGAAGCCCTAAATTTGCCTTTGCTTTCTCAAGCTCTCCTCCATTCTTCCCCTTCCAAATCATCGCCTAGTAAGCTCGCCAAGCCTCGCGTGACGCAGAAACAACTCGTTGTTGTGAGGAGATCCAGTCGCATAGCGAAACAATCTGCCCCCGTTTACGCCGAAGTTGTTGTAAATCGTGTGGTGATTCCTAGAAGGATCTCCAATGCTAGAGATCTTTCAAATCGAATTTATTCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCTGGGCGATTACAATCTGGATTAGAGACAAATTATCCCAACTTTATAAGGTCGATGCTTCCATCTCATGTTAGTGGTGGATTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGACGCACCTTCCAAATCGCGATGGAATTGTGACATTAATAGATGAAGATGGAGATGAGTATCCAACAGTATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAGGGCTTTTCAGTTGCTCATAAATTGGCAGATGGGGATGCTGTGATTTTTCAATTCATTAAACCTACAACGTGCAAGGTGATTGTTTTCCGTTCAAGCAAGATGTTGCCGGGTGGAACGTGCACATAA 684 44.15 MGIANLSYEECRHKRVQENKKRMEALNLPLLSQALLHSSPSKSSPSKLAKPRVTQKQLVVVRRSSRIAKQSAPVYAEVVVNRVVIPRRISNARDLSNRIYSSDEARKNAFERAGRLQSGLETNYPNFIRSMLPSHVSGGFWLGLPSHFCKTHLPNRDGIVTLIDEDGDEYPTVYLARKTGLSGGWKGFSVAHKLADGDAVIFQFIKPTTCKVIVFRSSKMLPGGTCT 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2739439 2741748 + CmaCh12G005280.1 Cma12g00528 305018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00528 227 SUPERFAMILY DNA-binding pseudobarrel domain 121 218 IPR015300 -
Cma12g00528 227 SMART B3_2 127 218 IPR003340 GO:0003677
Cma12g00528 227 CDD B3_DNA 125 216 IPR003340 GO:0003677
Cma12g00528 227 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 222 IPR044837 -
Cma12g00528 227 Gene3D - 102 219 IPR015300 -
Cma12g00528 227 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677
Cma12g00528 227 Pfam B3 DNA binding domain 127 216 IPR003340 GO:0003677
Cma12g00528 227 PANTHER B3 DOMAIN-CONTAINING PROTEIN 2 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01757 Cma-Chr11:11718981 Cma12g00528 Cma-Chr12:2739439 7.52E-75 dispersed
Cma12g00528 Cma-Chr12:2739439 Cma19g00610 Cma-Chr19:6650761 5.75E-71 dispersed
Cma12g00527 Cma-Chr12:2734249 Cma12g00528 Cma-Chr12:2739439 4.92E-117 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35994 PF02362 B3 4.70E-13 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00528 - - csv:101205473 352.443