Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00551 ATGGCGGTTTCACTTTCAGCCGCCACACCCTTCCATCTCCTGCCCTCTTCTTCATTGTACAGTTCCTCATTGAGCTCCAAACAACACCTCCTCCGATCACCCTCCCGCCGCACCGTAACAGCTCAAGCTCAATCTCAATCTCAGCCTCGCCAAACATGGCTTCCCGGCCTCGACCCTCCACCGCATCTCGACGGAACCCTCGCCGGAGATTTTGGGTTCGACCCACTTGGGCTCGGCGAAGACCCACATAGCTTGAAGTGGTTCGTCCAAGCAGAGCTCGTTCATTCTCGCTTCGCCATGCTTGGCGTCTCTGGAATTCTCCTCACAGATCTGCTTCGTGTAACAGGAATCAGTGAATTGCCAGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAACAAGGAAACTCTCTTCATTGTTCAGCTGCTGTTGATGGGGTTTGTGGAAACGAAAAGATATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGGACTTTCTTTGGATTAGAGTCCGCTTTCGAAGGACTCGAGCCCGGATACCCTGGGGGTCCTCTGCTAAATCCTCTGGGTCTGGCTAAAGATATCAAGAATGCACATGAGTGGAAGCTGAAGGAGATAAAGAATGGACGGCTTGCAATGGTAGCCATGCTGGGGATCTTTGTGCAAGCTTATGTAACTCAAACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAACACTATTATCCACACCCTCTCCAGCTCAAGTCCTTGA 780 50.77 MAVSLSAATPFHLLPSSSLYSSSLSSKQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTIIHTLSSSSP 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2857173 2859427 - CmaCh12G005510.1 Cma12g00551 305041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00551 259 SUPERFAMILY Chlorophyll a-b binding protein 45 256 - -
Cma12g00551 259 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 18 256 IPR001344 GO:0009765|GO:0016020
Cma12g00551 259 Pfam Chlorophyll A-B binding protein 59 228 IPR022796 -
Cma12g00551 259 Gene3D Chlorophyll a/b binding protein domain 50 258 - -
Cma12g00551 259 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC 18 256 - -
Cma12g00551 259 MobiDBLite consensus disorder prediction 31 53 - -
Cma12g00551 259 MobiDBLite consensus disorder prediction 31 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00551 K08911 LHCA5; light-harvesting complex I chlorophyll a/b binding protein 5 - csv:101219846 404.445
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00869 Cma-Chr10:4282043 Cma12g00551 Cma-Chr12:2857173 3.83E-47 dispersed
Cma12g00551 Cma-Chr12:2857173 Cma18g00694 Cma-Chr18:6352027 1.99E-60 dispersed
Cma12g00551 Cma-Chr12:2857173 Cma01g00793 Cma-Chr1:4282436 1.15E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g770 . . . . . . . . . Cmo12g00495 . . . Car12g00507 Sed11g0951 . Cpe07g00484 Bhi04g00351 Tan02g1837 Cmetu03g1729 . Hepe08g1279 . Lcy13g2071 Cla08g01570 Cam08g2067 Cec08g1644 Cco08g1778 Clacu08g1753 . Cre08g1539 Cone4ag1571 Cone7ag1381 . . . . . Cme03g02045 Blo17g00857 . . . . . . . . . . Cma12g00551 . . . . . . . . . . . . . . . . . . . Lsi08g01472 Csa02g01960 Chy03g01543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012954 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00551 Cma_Chr12 FPKM 2.571558 2.345659 9.05911 9.233624 81.915131 81.661423 87.471947 14.452524 14.013046 16.550173