Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00554 ATGGACGGTGGTGATGGAACTGTGAGGCTTGGGGCTCTGAACTTGAAGCCGGATCGGAGCGGGTTGGATTTGGGACCTGATGTGTCTGCTTCGTCTCCGGTGACCAGGCAGAAAGCCGCCGCTGCTAAACAGTTTATAGAGAATCATTACAAGAATTATCTCCAAGGTCTGCAGGATCGTAAAGAGAGACGGAGAACGCTCCAACGAAGAGCGCAAGAAGCTCAGGTATCAGCTGAAGAACAGGAAGAGATGTTGAGGAATTTGGAACGCAGAGAAACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATTGATGACTTTGAACAATTAACAGTCATCGGTAAAGGTGCATTCGGTGAGGTTAGATTATGTCGTGCAAAGGGAACTGGGGAAATTTTTGCCATGAAGAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCCGAGAGGAATTTACTTGCAGAGGTTGATAGTCGATGCATTGTAAAACTCTTCTATTCTTTTCAAGACTCTGAATTCTTATACCTTATTATGGAGTATTTACCTGGCGGTGACATTATGACATTACTAATGAGAGAAGACGTTCTGTCGGAGGATGTTGCTCGCTTTTACATAGCAGAGAGCGTTTTAGCTATTCATTCAATTCATCAACACAATTATATACATAGGGATATAAAACCAGATAACCTGATACTAGATAAGAATGGCCATCTGAAGCTTTCAGATTTTGGCTTGTGCAAGCCTCTGGATGATAAGTATTCAAGTATACTTTTGAATGACGAAGATTTAATAGCCCAGCAGGCCAAAAGTGAAGGTCAAGGTCATACTGACACTAATAGATCCCAGTGGATGATGCCAAAAGAACAAATTCAACAGTGGAAGCGTAATCGCCGTGCATTGGCTTTTTCAACTGTTGGGACCCTGGATTACATGGCACCTGAAGTATTGCTTAAGAAAGGATATGGGATGGAGTGTGATTGGTGGTCATTAGGGGCTATTATGTATGAAATGCTGGCTGGTTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACTTTCCGCAAGATAATAAATTGGAGAACTTGCCTGAAATTTCCCGAGGAACCGAAAATCTCAGAGGAAGCCAAGGATCTTATCACTCACTTGCTATGTGATGTTGAAACCAGGTTGGGAACTCGAGGAGTAGAGGAAATAAAGGCACATCCATGGTTCAAAGGGATTCAGTGGGATAAGCTGTACGAAATGGAAGCTGCGTACAAACCAACTGTCACTGGAGAACTAGACACTCAGAACTTTGAGAAATTTCCTGAAGTTCAAGACCCTCCATCAGATATGCCAACTGTTGGACCATGGAGGAAGATGCTAACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAGTCAAACGTCAAATCACTTGAGAGTACAGGTACGGATATTCATTCAAACGTGTCATGTAAAACACCGTCTCTAGTTTCCTTGTTGGGTCGAATAGACTTGCAAGAAACTGTGATACCAGAAGTTGAGCAAAAGCAGGAAGCACAAGACTATCCTTCTTCTGTGAGTAAATTTTGCTGA 1605 42.37 MDGGDGTVRLGALNLKPDRSGLDLGPDVSASSPVTRQKAAAAKQFIENHYKNYLQGLQDRKERRRTLQRRAQEAQVSAEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDVLSEDVARFYIAESVLAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNDEDLIAQQAKSEGQGHTDTNRSQWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEEPKISEEAKDLITHLLCDVETRLGTRGVEEIKAHPWFKGIQWDKLYEMEAAYKPTVTGELDTQNFEKFPEVQDPPSDMPTVGPWRKMLTSKDTNFIGFTFKKSNVKSLESTGTDIHSNVSCKTPSLVSLLGRIDLQETVIPEVEQKQEAQDYPSSVSKFC 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2884467 2889226 - CmaCh12G005540.1 Cma12g00554 305044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00554 534 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma12g00554 534 Coils Coil 57 101 - -
Cma12g00554 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Cma12g00554 534 CDD STKc_NDR_like 106 475 - -
Cma12g00554 534 Pfam Protein kinase domain 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00554 534 Gene3D Phosphorylase Kinase; domain 1 99 193 - -
Cma12g00554 534 SMART pkinase_C_6 412 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma12g00554 534 ProSiteProfiles Protein kinase domain profile. 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00554 534 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 509 - -
Cma12g00554 534 SUPERFAMILY Protein kinase-like (PK-like) 85 463 IPR011009 -
Cma12g00554 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 509 - -
Cma12g00554 534 MobiDBLite consensus disorder prediction 1 36 - -
Cma12g00554 534 Gene3D Transferase(Phosphotransferase) domain 1 194 428 - -
Cma12g00554 534 Pfam Protein kinase C terminal domain 430 474 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cma12g00554 534 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Cma12g00554 534 SMART serkin_6 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00185 Cma12g00554 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00554 Cma-Chr12:2884467 Cma17g00158 Cma-Chr17:800797 0 dispersed
Cma12g00554 Cma-Chr12:2884467 Cma05g00185 Cma-Chr5:795624 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68952 PF00069 Pkinase 5.20E-65 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00554 K08790 - csv:101222805 1001.12