Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00554 | ATGGACGGTGGTGATGGAACTGTGAGGCTTGGGGCTCTGAACTTGAAGCCGGATCGGAGCGGGTTGGATTTGGGACCTGATGTGTCTGCTTCGTCTCCGGTGACCAGGCAGAAAGCCGCCGCTGCTAAACAGTTTATAGAGAATCATTACAAGAATTATCTCCAAGGTCTGCAGGATCGTAAAGAGAGACGGAGAACGCTCCAACGAAGAGCGCAAGAAGCTCAGGTATCAGCTGAAGAACAGGAAGAGATGTTGAGGAATTTGGAACGCAGAGAAACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATTGATGACTTTGAACAATTAACAGTCATCGGTAAAGGTGCATTCGGTGAGGTTAGATTATGTCGTGCAAAGGGAACTGGGGAAATTTTTGCCATGAAGAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCCGAGAGGAATTTACTTGCAGAGGTTGATAGTCGATGCATTGTAAAACTCTTCTATTCTTTTCAAGACTCTGAATTCTTATACCTTATTATGGAGTATTTACCTGGCGGTGACATTATGACATTACTAATGAGAGAAGACGTTCTGTCGGAGGATGTTGCTCGCTTTTACATAGCAGAGAGCGTTTTAGCTATTCATTCAATTCATCAACACAATTATATACATAGGGATATAAAACCAGATAACCTGATACTAGATAAGAATGGCCATCTGAAGCTTTCAGATTTTGGCTTGTGCAAGCCTCTGGATGATAAGTATTCAAGTATACTTTTGAATGACGAAGATTTAATAGCCCAGCAGGCCAAAAGTGAAGGTCAAGGTCATACTGACACTAATAGATCCCAGTGGATGATGCCAAAAGAACAAATTCAACAGTGGAAGCGTAATCGCCGTGCATTGGCTTTTTCAACTGTTGGGACCCTGGATTACATGGCACCTGAAGTATTGCTTAAGAAAGGATATGGGATGGAGTGTGATTGGTGGTCATTAGGGGCTATTATGTATGAAATGCTGGCTGGTTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACTTTCCGCAAGATAATAAATTGGAGAACTTGCCTGAAATTTCCCGAGGAACCGAAAATCTCAGAGGAAGCCAAGGATCTTATCACTCACTTGCTATGTGATGTTGAAACCAGGTTGGGAACTCGAGGAGTAGAGGAAATAAAGGCACATCCATGGTTCAAAGGGATTCAGTGGGATAAGCTGTACGAAATGGAAGCTGCGTACAAACCAACTGTCACTGGAGAACTAGACACTCAGAACTTTGAGAAATTTCCTGAAGTTCAAGACCCTCCATCAGATATGCCAACTGTTGGACCATGGAGGAAGATGCTAACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAGTCAAACGTCAAATCACTTGAGAGTACAGGTACGGATATTCATTCAAACGTGTCATGTAAAACACCGTCTCTAGTTTCCTTGTTGGGTCGAATAGACTTGCAAGAAACTGTGATACCAGAAGTTGAGCAAAAGCAGGAAGCACAAGACTATCCTTCTTCTGTGAGTAAATTTTGCTGA | 1605 | 42.37 | MDGGDGTVRLGALNLKPDRSGLDLGPDVSASSPVTRQKAAAAKQFIENHYKNYLQGLQDRKERRRTLQRRAQEAQVSAEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDVLSEDVARFYIAESVLAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNDEDLIAQQAKSEGQGHTDTNRSQWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEEPKISEEAKDLITHLLCDVETRLGTRGVEEIKAHPWFKGIQWDKLYEMEAAYKPTVTGELDTQNFEKFPEVQDPPSDMPTVGPWRKMLTSKDTNFIGFTFKKSNVKSLESTGTDIHSNVSCKTPSLVSLLGRIDLQETVIPEVEQKQEAQDYPSSVSKFC | 534 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2884467 | 2889226 | - | CmaCh12G005540.1 | Cma12g00554 | 305044 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00554 | 534 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 412 | 484 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cma12g00554 | 534 | Coils | Coil | 57 | 101 | - | - | |
Cma12g00554 | 534 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 227 | 239 | IPR008271 | GO:0004672|GO:0006468 | |
Cma12g00554 | 534 | CDD | STKc_NDR_like | 106 | 475 | - | - | |
Cma12g00554 | 534 | Pfam | Protein kinase domain | 108 | 411 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g00554 | 534 | Gene3D | Phosphorylase Kinase; domain 1 | 99 | 193 | - | - | |
Cma12g00554 | 534 | SMART | pkinase_C_6 | 412 | 476 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cma12g00554 | 534 | ProSiteProfiles | Protein kinase domain profile. | 108 | 411 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g00554 | 534 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 6 | 509 | - | - | |
Cma12g00554 | 534 | SUPERFAMILY | Protein kinase-like (PK-like) | 85 | 463 | IPR011009 | - | |
Cma12g00554 | 534 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 6 | 509 | - | - | |
Cma12g00554 | 534 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cma12g00554 | 534 | Gene3D | Transferase(Phosphotransferase) domain 1 | 194 | 428 | - | - | |
Cma12g00554 | 534 | Pfam | Protein kinase C terminal domain | 430 | 474 | IPR017892 | GO:0004674|GO:0005524|GO:0006468 | |
Cma12g00554 | 534 | ProSitePatterns | Protein kinases ATP-binding region signature. | 114 | 137 | IPR017441 | GO:0005524 | |
Cma12g00554 | 534 | SMART | serkin_6 | 108 | 411 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g00185 | Cma12g00554 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g00554 | Cma-Chr12:2884467 | Cma17g00158 | Cma-Chr17:800797 | 0 | dispersed | |
Cma12g00554 | Cma-Chr12:2884467 | Cma05g00185 | Cma-Chr5:795624 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68952 | PF00069 | Pkinase | 5.20E-65 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00554 | K08790 | - | csv:101222805 | 1001.12 |