Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00556 ATGAATTTCAAGGATTTTGGAAGTGACCCATCTGCCGGAAACGGCGGAGGAGGTGGGCGGCCTTCTGCTAACCATCCATTAGCGCGGCAATCATCTATTTACTCGCTGACATTCGATGAGTTTCAGAGTATGGGGAGTATAGGGAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACGATGGCATCTTCTGCTGCTGTTGTTGCTGCTGCTGCTAAAGAAGGGGCTGGTGGTGTTAATGGTAGTGGTGGGTATTTGCAGAGACAAGGCTCTTTGACACTGCCACGGACACTCAGCCAGAAGAAGGTGGATGAGGTATGGAAGGACATAATGGATGAACATGGTGGTACTAAAGATGGGAATATTGTTGCTTCTGGTTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAAGAATTTTTGTTGAGAGCTGGAGTTGTGAGAGAGGATACTCAATTGAACGGAAACCCCAACAATGGAGGATTCTTTGGCAATAACAATCATATTCCAATTCAATCTTCGAACTTATTGTTGAATGTTAATGGAGTTAGAGCACATCAGCCACAGCCAATATTTCCAAAGCAGCCTACTGAGACCACATATGGGTCTCAGTTGCCTTTGCCTAGTGATGGGATTATGGGGCTTGCGGATCAAGGGTTGAGCTCAAATTTGATTCCAGGCTCTGCACTGCATGGTGGAAGGATGGGATTGGTTAGCTTAGCAGCTGGGGCTATGCCTGTTGCAACAGGATCTCCAGCAAACCAGCTATCATCTGATGGGATTGGAAAGAGCAATGGTGATACCTCGTCCTTGTCTCCGGTGCCTTACACGCTTAATGGAGTACGGGGGAGGAGATGCAATGGGACTCTGGACAGGGTTGTCGAGAGGAGGCAGCGGAGAATGATAAAGAACAGGGAGTCGGCTGCTCGATCGCGGGCTCGAAAGCAGGCAGAAATCATGGAAATGCACAATAACCGGGCATTGAAAGTAATGGATACACAACAAGGAACGAAGAAACGATGCTTAAGACGAACACAGACTGGTGTTGGATTTGGTTCTAAGTTGATCGATCATAAGGACTTCGATCGATTGTTTTGGAACGAACGCAAAGCCTGCGTTGTTCGATTCATACAGCTCCTCCACCCTCCTATGGCGCTGCTGCTGCTGCTGACAGGTCGAGTAAATGGCAATCCTGGAAGCAGGATTGAAGAGGTTGAATTCATTGGCTACCATTGCCATATGATTTGCTTTGGAAGTAGAGTGAAGACGTTGTCGGAGATGGGGTTTCGAGAACAAACGGCGTTGTCGAGACCAGCTTTCAGAGCTCGGGATTCCAGTCCTGATTCTGTCATTTATGCGCTCGAATCCAGTTTTAGTCTCTTCTCCTCTGCTTCTGCTAGTGTTGAGCGATGTTCTTTTGCATCAGAGGCCCACGATCGCGATTCCCTTATCTCTGAAATCTCTCTTCATTTGGCAGGGCATGATGAAGATCCAGAACAAAACAAGCCTGCACTAAGCAACAAGCACAGTCGTCTCTATACAAATGGAGAAAAAGCGAAAGTTCATAAAGATGAAAGCAATGTCGATTTAGACGACGAGAATCGAACGGTCGATTCAGCGAGGAATTCGTTTTCTCTTGCTCTTAAAGAGTGTCAAGATCATAGATCCAGATCTAAAGCTCAATCCAGTAAGCTGGATGAAAAGAAACCTGCTTTGTTGGATCTAAACAACGCTAATACAGCTTCCTCGCCTCGTTTAACGGCTGTCAAGAAGAACGTTGTAGTAACGACGCATAAGACTGCAACATTTCCAAGCCCTGGGACGCCGAGTTATCGGCACAATAGCTTTAGTATGCAAAAAGGGTGGAGTTCAGAGCGAGTGCCATTTCCGAACAATGGTGGCCGGAAACATACTAATAACCCTGCATTGCTGACTCTCAACAGTGGCAGAACGTTGCCATCGAAGTGGGAAGATGCTGAAAGGTGGATCTTTAGTCCTATATCCAGTGATGGGGTTGTGAGGACTTCAGCTCAACGTCCTCAACAGCGTCCGAAGTCGAAGAGTGGTCCGCTTGGCCCTCCTGGTACTGCATACTATTCGATGTATTCACCTGCTGCTCCTGCCTATGAATGTGGGACTTTTAGGAACTTCATTACAGAATCCCCATTTTCAGCTGGAGTTGTATCAACGAATGGTTTGGCTGTTCATTCTGGTGGACATGAAGGGTCCTTTCATGGACAAACAGAGCCCTCCATGGCACGCTCAGTTAGCGTTCATGGCTGCTCTGAAATGTCGGGTCAATTGTCATCAACAACAGGCTTGCAAGATGGATCGAGAGAAAACTTAGCTACAGTCAAGAACTCGGGGACAGACGTTTCTCGTGTTGTTTCAAGAAGGGACGTGGCTACACAAATGAGCCCGGAGGATAGCATGCATTCATCTCCAAGGACGAAGTCGTCAATCACTGCCTCCACTTCATCTGCTATGCATATGTTTGAGCTGGGAGCTGTTACTTCTTCTAAGTTGGATATCAGGGACGTGCAAGTCGATAATCAGGTCGCCACGACAAGATGGTCGAAGAAACATAAAGGGTCATTTCCTCGGAAAGATTCTCTCGACTACAAGAGGAAGAACGATGTGGATGTGGCTTCTCGTTGTCCGGATTTAGACATTCCTATCATGGGAAAAAGTATTTCAAATGTTAAGCGTGAGGAAGCGAAAATAGCTGCGTGGGAGAATCTACAGAAAGCGAAGGCCGATGCAGCTATACGAAAGCTAGAGATGAAGCTGGAGAAGAAGCGAGCGAGCTCGATGCATAAGATCATGAATAAACTGAAATCTGCTCAGAAGAAAGCCCAAGAAATGAGGAACTCAGTGATGGGAAACCAGTCCCTCCAAGATAACAGGACATCTTCTTTCAAGTCTCTATCTTTTAATCGAAGCCGTCATATGAGCTCCCTAAGTGGTTGTTTCACCTGCCATGCTTTTTAG 3030 46.7 MNFKDFGSDPSAGNGGGGGRPSANHPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAVVAAAAKEGAGGVNGSGGYLQRQGSLTLPRTLSQKKVDEVWKDIMDEHGGTKDGNIVASGLQQRQQTLGEMTLEEFLLRAGVVREDTQLNGNPNNGGFFGNNNHIPIQSSNLLLNVNGVRAHQPQPIFPKQPTETTYGSQLPLPSDGIMGLADQGLSSNLIPGSALHGGRMGLVSLAAGAMPVATGSPANQLSSDGIGKSNGDTSSLSPVPYTLNGVRGRRCNGTLDRVVERRQRRMIKNRESAARSRARKQAEIMEMHNNRALKVMDTQQGTKKRCLRRTQTGVGFGSKLIDHKDFDRLFWNERKACVVRFIQLLHPPMALLLLLTGRVNGNPGSRIEEVEFIGYHCHMICFGSRVKTLSEMGFREQTALSRPAFRARDSSPDSVIYALESSFSLFSSASASVERCSFASEAHDRDSLISEISLHLAGHDEDPEQNKPALSNKHSRLYTNGEKAKVHKDESNVDLDDENRTVDSARNSFSLALKECQDHRSRSKAQSSKLDEKKPALLDLNNANTASSPRLTAVKKNVVVTTHKTATFPSPGTPSYRHNSFSMQKGWSSERVPFPNNGGRKHTNNPALLTLNSGRTLPSKWEDAERWIFSPISSDGVVRTSAQRPQQRPKSKSGPLGPPGTAYYSMYSPAAPAYECGTFRNFITESPFSAGVVSTNGLAVHSGGHEGSFHGQTEPSMARSVSVHGCSEMSGQLSSTTGLQDGSRENLATVKNSGTDVSRVVSRRDVATQMSPEDSMHSSPRTKSSITASTSSAMHMFELGAVTSSKLDIRDVQVDNQVATTRWSKKHKGSFPRKDSLDYKRKNDVDVASRCPDLDIPIMGKSISNVKREEAKIAAWENLQKAKADAAIRKLEMKLEKKRASSMHKIMNKLKSAQKKAQEMRNSVMGNQSLQDNRTSSFKSLSFNRSRHMSSLSGCFTCHAF 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2893482 2903994 + CmaCh12G005560.1 Cma12g00556 305046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00556 1009 MobiDBLite consensus disorder prediction 685 707 - -
Cma12g00556 1009 MobiDBLite consensus disorder prediction 751 833 - -
Cma12g00556 1009 MobiDBLite consensus disorder prediction 561 583 - -
Cma12g00556 1009 Gene3D - 307 358 - -
Cma12g00556 1009 Coils Coil 951 971 - -
Cma12g00556 1009 PANTHER OS02G0116800 PROTEIN 509 1007 - -
Cma12g00556 1009 CDD bZIP_plant_BZIP46 309 334 - -
Cma12g00556 1009 MobiDBLite consensus disorder prediction 761 833 - -
Cma12g00556 1009 MobiDBLite consensus disorder prediction 1 26 - -
Cma12g00556 1009 SMART brlzneu 305 370 IPR004827 GO:0003700|GO:0006355
Cma12g00556 1009 Coils Coil 929 949 - -
Cma12g00556 1009 MobiDBLite consensus disorder prediction 528 547 - -
Cma12g00556 1009 Pfam Remorin, C-terminal region 909 984 IPR005516 -
Cma12g00556 1009 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 312 327 IPR004827 GO:0003700|GO:0006355
Cma12g00556 1009 PANTHER REMORIN FAMILY PROTEIN 509 1007 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00556 - - - csv:101202771 895.575
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma09g00233 Cma12g00556 CCT
Cma09g00233 Cma12g00556 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00556 Cma-Chr12:2893482 Cma14g00305 Cma-Chr14:1351951 1.22E-41 dispersed
Cma15g00547 Cma-Chr15:2546949 Cma12g00556 Cma-Chr12:2893482 4.54E-33 dispersed
Cma11g01743 Cma-Chr11:11569204 Cma12g00556 Cma-Chr12:2893482 1.24E-70 wgd
Cma12g00556 Cma-Chr12:2893482 Cma19g00600 Cma-Chr19:6585446 2.61E-81 wgd
Cma12g00556 Cma-Chr12:2893482 Cma03g00977 Cma-Chr3:6913953 2.15E-48 wgd
Cma12g00556 Cma-Chr12:2893482 Cma05g00180 Cma-Chr5:760821 0 wgd
Cma12g00556 Cma-Chr12:2893482 Cma07g00704 Cma-Chr7:3088404 4.17E-77 wgd
Cma12g00556 Cma-Chr12:2893482 Cma09g00233 Cma-Chr9:995679 5.92E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g756 . Blo12g00958 . Bda03g00210 . . Bma04g00162 . Cmo05g00178 Cmo12g00500 . Cma09g00233 . Car12g00511 Sed11g0942 . . Bhi04g00359 Tan02g1815 Cmetu03g0006 . Hepe08g1289 . Lcy13g2086 Cla08g01576 Cam08g2074 Cec08g1654 Cco08g1785 Clacu08g1761 . Cre08g1545 Cone4ag1581 Cone7ag1370 Cone17ag0845 Cone20ag0193 Lsi04g01558 Csa04g02412 . Cme03g02054 Blo17g00880 . . . . Bpe05g00024 . Bma05g00037 Sed13g1753 . Cmo09g00226 Cma12g00556 . Car05g00152 . . . Bhi09g03315 Tan01g4778 Cmetu07g0900 . . . . Cla05g02044 Cam05g2194 Cec05g2212 Cco05g2257 Clacu05g2188 Cmu05g2054 Cre05g2183 Lsi08g01479 Csa02g01942 Chy07g00136 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005157 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 0 1 1 1 1 1 1 1 1 6 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00556 Cma_Chr12 FPKM 16.706572 16.368288 21.700539 21.412121 14.562756 13.288088 13.099656 10.208711 10.646925 9.907181