Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00559 ATGGCGGATCTGTATGGAACATCCCCTTCTTCGGATGTTGTTGGTTTGCCTCATGACCCAGAAAATTTCTCTTCCTTCATCAATCAGCACCTTCAAACCACCACTTCTTCTGCTTCTTCCCCTTCTTGTGTCTCCTTCAAGAACAAGTTCATGCCGTTCTTGCATTCTCAACCTCCTTGGCACTCTTCGTCTCTGTTTTCGCGGCGGCGGGGGGAGTCCACCTCTATTGCTGGAGTGTCCTGCATGCTCGATTTTCCAGAGAGTCGGTTTCAGTTGAGTCGTGTTTTGAATCACGCTCAGTCGGATTCTAGATTTGGCGATGCTTCGTATTTGGCTGTGAACTCCACTTGCGGCGCTGTGAAATTGTCGGATCCTGGGGATTTCGTCAAAGAAAGTTCGGATAATAATGTGTTTTCTTCCTCCGGCGCTGTCGATTCTGATACAAATGCGCCGTTCAAGAGAAGGGGTCTTTCATCTGAAAATGATCTTGGGGATTTCAGCTGTGATAGCGAGGGTGCCGATGTGCCTGAAGCTCCATCCAGTACTGATCTGCCTCGAAGTTCATCGAAGAGAAGCAGAAGTGCCGAGGTCCATAATATGTCGGAGAAGAGACGACGGAGGAGGATCAATGAGAAAATGAAAGCCCTTCAAAATCTAATTCCCAATTCAAACAAGACGGACAAAGCTTCAATGTTGGATGAAGCAATTGAGTATTTGAAGCAGCTTCAACTTCAAGTTCAGATGTTATCGATGAGAAATGGCTCGAGTTTGCAACCGATGTGCTTGCCAGGAATGCTGCAGCCAATGCAACTACCTGAGATGGGGTTGGACTTCGACGTAGGAAATGCATTTCTAGCATCCAGAAGAGGAATAAGCGCGTTGTCTCCCGGCAATGAAGGGTGTCCAATGCAATCGACATTCAATCTTTCCAATAAATGCAACCTTTCAGATCAGTCACTAGCCATCCCTTCTGTACCAAACATCACAACCTCAGAAACCACATTCGGGTTTGAATCGGCGATTCAGGCTTACGATGGACAGTTCGACCTTTCCTCTAATTTCAAGGAAGCCCAACCAGCCACGCAGCTAGATTGCTGTGCTCAAACACGGAAGGACTCAGCAAACGCGTCGTAG 1134 47.44 MADLYGTSPSSDVVGLPHDPENFSSFINQHLQTTTSSASSPSCVSFKNKFMPFLHSQPPWHSSSLFSRRRGESTSIAGVSCMLDFPESRFQLSRVLNHAQSDSRFGDASYLAVNSTCGAVKLSDPGDFVKESSDNNVFSSSGAVDSDTNAPFKRRGLSSENDLGDFSCDSEGADVPEAPSSTDLPRSSSKRSRSAEVHNMSEKRRRRRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGSSLQPMCLPGMLQPMQLPEMGLDFDVGNAFLASRRGISALSPGNEGCPMQSTFNLSNKCNLSDQSLAIPSVPNITTSETTFGFESAIQAYDGQFDLSSNFKEAQPATQLDCCAQTRKDSANAS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2912007 2915857 - CmaCh12G005590.1 Cma12g00559 305049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00559 377 PANTHER TRANSCRIPTION FACTOR SPATULA 21 358 - -
Cma12g00559 377 MobiDBLite consensus disorder prediction 133 155 - -
Cma12g00559 377 Coils Coil 199 219 - -
Cma12g00559 377 CDD bHLH_AtPIF_like 195 254 - -
Cma12g00559 377 SMART finulus 199 248 IPR011598 GO:0046983
Cma12g00559 377 Coils Coil 232 252 - -
Cma12g00559 377 Pfam Helix-loop-helix DNA-binding domain 197 243 IPR011598 GO:0046983
Cma12g00559 377 Gene3D - 188 253 IPR036638 GO:0046983
Cma12g00559 377 MobiDBLite consensus disorder prediction 189 206 - -
Cma12g00559 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Cma12g00559 377 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 358 IPR031066 -
Cma12g00559 377 MobiDBLite consensus disorder prediction 133 208 - -
Cma12g00559 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 254 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00559 - - - csv:105434642 625.165
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00174 Cma12g00559 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00559 Cma-Chr12:2912007 Cma12g00867 Cma-Chr12:6454291 1.03E-32 dispersed
Cma12g00559 Cma-Chr12:2912007 Cma03g00969 Cma-Chr3:6870767 2.87E-38 wgd
Cma12g00559 Cma-Chr12:2912007 Cma05g00174 Cma-Chr5:736528 0 wgd
Cma12g00559 Cma-Chr12:2912007 Cma07g00695 Cma-Chr7:3062141 7.21E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g744 . . . . . . . . Cmo05g00172 Cmo12g00502 . . . Car12g00514 Sed10g1234 . Cpe07g00491 Bhi04g00369 Tan02g1798 Cmetu03g0637 . Hepe08g1296 . Lcy13g2092 . . . . . . . Cone4ag1587 Cone7ag1362 . . . . . Cme03g02063 Blo17g00875 . . . . . . Bma05g00041 . . . Cma12g00559 Cma05g00174 Car05g00147 . Cpe11g00143 . . . . . . . . . . . . . . . . Csa02g01934 Chy03g01556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007940 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35995 PF00010 HLH 2.30E-14 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00559 Cma_Chr12 FPKM 0.882377 1.213189 3.565448 2.593868 6.686966 6.128121 6.130816 0.744074 0.75374 0.661971