Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00560 ATGCAAGGGCAAAGGAGTAGTGTTGGTTCATTGTCGGAAACCATAAACTTTGAACATGGATCTTCATCGAATAATCCTGGTAGCCAACCAGTTTACTGGAATAACATGTGGAATCCAGCAGAAAACCGAATACCGGATTATTTGTTGCCTACTACTGATATAAATACGGGATATGTAACCACGGTGAGCCATGAGCAACGGAATTTGAGTAGATGGAGCTTAGGTGAACCTAGCTCTTGTGATATGCAAACCGAGGCATTATCTGATGAACAAAAAGGTGAGGTTGGATGGTCTTCAGTGTCTCGTGATGCAGATGGTCCAGTTACAGAAACCCGACTCTGTGAGCCGTCAAATAATCCTACACTGGGTCATGTGAATTTCAGCCCAATGATTATACAAAATTCCAATTCTAATGCACTTCCTCATAGTCTAAATTTAAATGCAAGTTTTGCTAGTCATGGAGGTGAGAGTAGCCGAGTTAATGAAGGTTCTAACTTGTATAAATCTAATGGATCAGAAGAAGGACGGGCTCTATGTTCTAGTGCTTCGGATCCTCTTTTACTTCCTTCTGGAAATAGTGGACTTCCAGTGGTTGCAAATGATGGTAGAGCAGGATCTTCCTTGGATGGACGTCGAGCACCCTGTAAACGAAAAGCTATCGAGGGAAGTGTTACACAGCCCTCTTTAAGTGGAAGCAGTAACTATGCTCAGCATATTGAAAGTGGTGCTGAGCCCACTCTTCCAGTTTTTCCTGGTCGCTACAACACAGGAAGTAGGCTAACTATTCCTGCTCCACCAGCACGAATGAATCAAGCTCCTGTACGAGGTGCAGGTGAAATGACTTCCAACAGCTTCTCTGAGTCAATGGTTGCAGAAAGTTCAGATAGTTCTCAAAGAAACTATCGTATAAGGATTAGTTCATCCAATGCACAAGATTCTTTTGCACCGACTGGAATGACTGTTCGGCATCCCGGGGCCTCATCTTCCCAGCTGCCAGCTAGAATTCTACCTGCTGAGCATGTATTAGACTTGAGGCCAGCACCAGCTGTAGACAATATATCTGCTCAAGGTCAGCCACTTATGATACATGTGCCTGCTTTACCTCGAAGTCTGCAACCATATAGGTGGAATGGGAGCTCTACTTCAAGAAGTGGCAGTTCATCGAGCTCTGCAGGGGAGAGACAGGTGGTGCAACGTGAGGAGGTGAGACCAAGCAACATGGGAAGAAACGTATCTGAACATCCCATGTTTGTCCCAGCAAACGAGCTGAGGAATTTGGTCCGTAATCCATCAAGTAGAGGTTTAGCATCTTCAAACCTGTCCATTCCTGGAACTGTTGCTTCTACATCCAGGGTTGGTTCAAGTTCAGGGGTCCACCCCCCTTCTGGACCTTGGATGCCTCCTGAGAATAGTCCAACACAGTTTCCTAGAAGGTTAACAGAATATGTTCGTAGGCAGCTATTTTCTTCTGCTACAAATGAGTCTGGAGGTAGGACAAGTAATTATTCACAACGATCCGGTTCTACTTCTGCCCAGGATATGGTTCTTTCATCTGGATCTGGCCGTCGGGGGCACCATTTATTGCAACCAAGGTCCGCATTATGGATGGAAAGAAGAGGTGACAGTGGGCTTGGTCTTCCCTATTCATTACGAACCTTGGCTACTTCCGGTGAAGGAAGCGACAATAATAGACTAGTATCTGAGCAGATTCGCAATGTCTTGGGCCTTGTCCGCCGCGGGGAAAGCTTACGAGTTGAGGATGTGATGATCCTGGACCAGTCACTATTTTTCGGGATGGCTGATATTTACGATCGGCACAGGGATATGCGCCTTGACGTTGACAACATGTCGTATGAGGAATTGTTGGCTTTGGAAGAGCGCATTGGAAACGTCAACACTGGACTAAGCGAAGAGACGATTGTTGCTCGACTGAAACGAACGAAGCACGTCAATGCCCCCGAACCACAGGTCGAGGAAGAACCATGTTGTGTTTGTCAGGAGGAATACAAAGAAGGGGAAGACATTGGAATGCTGGACTGCGGGCACAAGTTCCACACACAATGTATCAAGCAATGGCTGATGCAAAAGAATATATGTCCCATCTGCAAAACAACTGGTTTTGCAAGCCGAGAATGA 2136 45.97 MQGQRSSVGSLSETINFEHGSSSNNPGSQPVYWNNMWNPAENRIPDYLLPTTDINTGYVTTVSHEQRNLSRWSLGEPSSCDMQTEALSDEQKGEVGWSSVSRDADGPVTETRLCEPSNNPTLGHVNFSPMIIQNSNSNALPHSLNLNASFASHGGESSRVNEGSNLYKSNGSEEGRALCSSASDPLLLPSGNSGLPVVANDGRAGSSLDGRRAPCKRKAIEGSVTQPSLSGSSNYAQHIESGAEPTLPVFPGRYNTGSRLTIPAPPARMNQAPVRGAGEMTSNSFSESMVAESSDSSQRNYRIRISSSNAQDSFAPTGMTVRHPGASSSQLPARILPAEHVLDLRPAPAVDNISAQGQPLMIHVPALPRSLQPYRWNGSSTSRSGSSSSSAGERQVVQREEVRPSNMGRNVSEHPMFVPANELRNLVRNPSSRGLASSNLSIPGTVASTSRVGSSSGVHPPSGPWMPPENSPTQFPRRLTEYVRRQLFSSATNESGGRTSNYSQRSGSTSAQDMVLSSGSGRRGHHLLQPRSALWMERRGDSGLGLPYSLRTLATSGEGSDNNRLVSEQIRNVLGLVRRGESLRVEDVMILDQSLFFGMADIYDRHRDMRLDVDNMSYEELLALEERIGNVNTGLSEETIVARLKRTKHVNAPEPQVEEEPCCVCQEEYKEGEDIGMLDCGHKFHTQCIKQWLMQKNICPICKTTGFASRE 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2921491 2924877 - CmaCh12G005600.1 Cma12g00560 305050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00560 711 SUPERFAMILY RING/U-box 651 705 - -
Cma12g00560 711 Pfam Ring finger domain 662 703 IPR001841 -
Cma12g00560 711 SMART ring_2 662 702 IPR001841 -
Cma12g00560 711 MobiDBLite consensus disorder prediction 489 517 - -
Cma12g00560 711 ProSiteProfiles Zinc finger RING-type profile. 662 703 IPR001841 -
Cma12g00560 711 MobiDBLite consensus disorder prediction 373 416 - -
Cma12g00560 711 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 707 IPR045191 GO:0061630
Cma12g00560 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 706 IPR013083 -
Cma12g00560 711 MobiDBLite consensus disorder prediction 276 327 - -
Cma12g00560 711 MobiDBLite consensus disorder prediction 489 525 - -
Cma12g00560 711 CDD RING-H2_TTC3 661 703 - -
Cma12g00560 711 MobiDBLite consensus disorder prediction 430 457 - -
Cma12g00560 711 MobiDBLite consensus disorder prediction 430 475 - -
Cma12g00560 711 MobiDBLite consensus disorder prediction 373 395 - -
Cma12g00560 711 MobiDBLite consensus disorder prediction 89 110 - -
Cma12g00560 711 MobiDBLite consensus disorder prediction 152 175 - -
Cma12g00560 711 MobiDBLite consensus disorder prediction 242 328 - -
Cma12g00560 711 MobiDBLite consensus disorder prediction 1 29 - -
Cma12g00560 711 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 707 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00560 - - - csv:101203243 1229.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01571 Cma-Chr1:10869907 Cma12g00560 Cma-Chr12:2921491 2.45E-35 dispersed
Cma05g00629 Cma-Chr5:3152091 Cma12g00560 Cma-Chr12:2921491 7.54E-37 dispersed
Cma09g00834 Cma-Chr9:4100613 Cma12g00560 Cma-Chr12:2921491 4.94E-31 dispersed
Cma12g00293 Cma-Chr12:1504259 Cma12g00560 Cma-Chr12:2921491 5.00E-37 dispersed
Cma12g00560 Cma-Chr12:2921491 Cma16g00414 Cma-Chr16:2064349 2.83E-34 dispersed
Cma12g00560 Cma-Chr12:2921491 Cma05g00173 Cma-Chr5:732376 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g742 . . . . . . . . . Cmo12g00503 . . . Car12g00516 . . Cpe07g00492 Bhi04g00371 Tan02g1796 . . Hepe08g1297 . Lcy13g2093 . . . . . . . . . . . . . . Cme03g02064 Blo17g00874 . . Bda01g01607 Bpe02g01796 . Bma01g00659 . . . . Cma12g00560 . . . . . . . . . . . . . . . . . . . . . Chy03g01557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00560 Cma_Chr12 FPKM 37.199299 39.820992 41.573723 41.490192 48.549957 51.935318 47.586498 24.064295 22.733198 23.64677