Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00562 ATGGGATTAACCATGAAGCTTCATCACTTCTCCCCTTGTTCTTGGGATGAGCCCTCTCTCTCCCTTGCTTGCACGAAGCGCTTACGTCCTCCTCCGCCCACCTCCGCCACTTCAACGCTCACCGCTTTCGACCTCAAGACCTTCATCAGGCCTGATACTAAGAAAGACTCGTCTTACCCTCGAACAGGAGTTGTGGAGATGCAACCAGGGGGCACGCGGTGGAACCCGACGCAAGAACAAATAGCGATATTGGAGATGCTTTATAGGAGAGGAATGAGGACTCCCAATGCTCAACAGATTGAACAAATTACTACACAGCTTGGGAAGTACGGGAAGATTGAAGGAAAGAATGTGTTTTATTGGTTTCAGAATCATAAAGCTCGAGAGCGACAGAAGCAGAAGCGCAATACTCTTGGTCTTGCTCACTCCTCCCCAATAACTCCGACGACGACAACAACGACAACCATCGTCACGCCCATCCCCTTGGACCCATCGGGAGGGGAAGATAGCCCGTACAAGAGGAAGTGCATGAACTGGGGGTTTGAATGTTTGGTTGAAGATAGAACTCTGGAGTTATTCCCTTTGCACCCAGAAGGCAGATGA 603 50.08 MGLTMKLHHFSPCSWDEPSLSLACTKRLRPPPPTSATSTLTAFDLKTFIRPDTKKDSSYPRTGVVEMQPGGTRWNPTQEQIAILEMLYRRGMRTPNAQQIEQITTQLGKYGKIEGKNVFYWFQNHKARERQKQKRNTLGLAHSSPITPTTTTTTTIVTPIPLDPSGGEDSPYKRKCMNWGFECLVEDRTLELFPLHPEGR 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2933794 2934695 - CmaCh12G005620.1 Cma12g00562 305052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00562 200 CDD homeodomain 72 133 IPR001356 GO:0003677
Cma12g00562 200 Gene3D - 71 138 - -
Cma12g00562 200 Pfam Homeodomain 72 131 IPR001356 GO:0003677
Cma12g00562 200 MobiDBLite consensus disorder prediction 131 154 - -
Cma12g00562 200 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 200 - -
Cma12g00562 200 MobiDBLite consensus disorder prediction 137 154 - -
Cma12g00562 200 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 200 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Cma12g00562 200 ProSiteProfiles 'Homeobox' domain profile. 67 132 IPR001356 GO:0003677
Cma12g00562 200 SUPERFAMILY Homeodomain-like 67 136 IPR009057 -
Cma12g00562 200 SMART HOX_1 69 136 IPR001356 GO:0003677
Cma12g00562 200 MobiDBLite consensus disorder prediction 54 73 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00171 Cma12g00562 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00311 Cma-Chr11:1543460 Cma12g00562 Cma-Chr12:2933794 1.44E-29 dispersed
Cma12g00562 Cma-Chr12:2933794 Cma13g00993 Cma-Chr13:7684742 7.94E-30 dispersed
Cma01g00592 Cma-Chr1:3110404 Cma12g00562 Cma-Chr12:2933794 3.33E-30 transposed
Cma12g00562 Cma-Chr12:2933794 Cma05g00171 Cma-Chr5:722174 1.57E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35996 PF00046 Homeodomain 2.60E-19 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00562 - - cmax:111496401 397.512