Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00562 ATGGGATTAACCATGAAGCTTCATCACTTCTCCCCTTGTTCTTGGGATGAGCCCTCTCTCTCCCTTGCTTGCACGAAGCGCTTACGTCCTCCTCCGCCCACCTCCGCCACTTCAACGCTCACCGCTTTCGACCTCAAGACCTTCATCAGGCCTGATACTAAGAAAGACTCGTCTTACCCTCGAACAGGAGTTGTGGAGATGCAACCAGGGGGCACGCGGTGGAACCCGACGCAAGAACAAATAGCGATATTGGAGATGCTTTATAGGAGAGGAATGAGGACTCCCAATGCTCAACAGATTGAACAAATTACTACACAGCTTGGGAAGTACGGGAAGATTGAAGGAAAGAATGTGTTTTATTGGTTTCAGAATCATAAAGCTCGAGAGCGACAGAAGCAGAAGCGCAATACTCTTGGTCTTGCTCACTCCTCCCCAATAACTCCGACGACGACAACAACGACAACCATCGTCACGCCCATCCCCTTGGACCCATCGGGAGGGGAAGATAGCCCGTACAAGAGGAAGTGCATGAACTGGGGGTTTGAATGTTTGGTTGAAGATAGAACTCTGGAGTTATTCCCTTTGCACCCAGAAGGCAGATGA 603 50.08 MGLTMKLHHFSPCSWDEPSLSLACTKRLRPPPPTSATSTLTAFDLKTFIRPDTKKDSSYPRTGVVEMQPGGTRWNPTQEQIAILEMLYRRGMRTPNAQQIEQITTQLGKYGKIEGKNVFYWFQNHKARERQKQKRNTLGLAHSSPITPTTTTTTTIVTPIPLDPSGGEDSPYKRKCMNWGFECLVEDRTLELFPLHPEGR 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2933794 2934695 - CmaCh12G005620.1 Cma12g00562 305052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00562 200 CDD homeodomain 72 133 IPR001356 GO:0003677
Cma12g00562 200 Gene3D - 71 138 - -
Cma12g00562 200 Pfam Homeodomain 72 131 IPR001356 GO:0003677
Cma12g00562 200 MobiDBLite consensus disorder prediction 131 154 - -
Cma12g00562 200 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 200 - -
Cma12g00562 200 MobiDBLite consensus disorder prediction 137 154 - -
Cma12g00562 200 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 200 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Cma12g00562 200 ProSiteProfiles 'Homeobox' domain profile. 67 132 IPR001356 GO:0003677
Cma12g00562 200 SUPERFAMILY Homeodomain-like 67 136 IPR009057 -
Cma12g00562 200 SMART HOX_1 69 136 IPR001356 GO:0003677
Cma12g00562 200 MobiDBLite consensus disorder prediction 54 73 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00562 - - - cmax:111496401 397.512
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00171 Cma12g00562 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00311 Cma-Chr11:1543460 Cma12g00562 Cma-Chr12:2933794 1.44E-29 dispersed
Cma12g00562 Cma-Chr12:2933794 Cma13g00993 Cma-Chr13:7684742 7.94E-30 dispersed
Cma01g00592 Cma-Chr1:3110404 Cma12g00562 Cma-Chr12:2933794 3.33E-30 transposed
Cma12g00562 Cma-Chr12:2933794 Cma05g00171 Cma-Chr5:722174 1.57E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00071 CCT,CST,ECH 1 174 Wox Gene Family AT3G18010 58.0 4.1e-48 189.5
Cma13g00993 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 57.0 1.3e-46 184.5
Cma11g00311 CCT,ECH 1 165 Wox Gene Family AT3G18010 56.0 2.2e-41 167.2
Cma06g00070 . 4 234 Wox Gene Family AT3G03660 51.9 7.5e-51 198.4
Cma14g00454 . 14 246 Wox Gene Family AT3G03660 50.6 2.8e-42 169.9
Cma16g01272 . 136 409 Wox Gene Family AT4G35550 52.2 1.2e-71 267.3
Cma06g00150 . 28 265 Wox Gene Family AT4G35550 53.7 1.3e-65 247.3
Cma09g00047 CST 1 191 Wox Gene Family AT4G35550 60.7 5.3e-56 215.3
Cma01g02023 CST 40 181 Wox Gene Family AT4G35550 71.3 8.0e-52 201.4
Cma06g00150 . 28 167 Wox Gene Family AT1G20700 56.6 2.0e-39 159.8
Cma01g02023 CST 57 188 Wox Gene Family AT1G20700 58.5 5.8e-39 158.3
Cma05g00171 CST 10 181 Wox Gene Family AT1G46480 58.9 4.2e-47 185.3
Cma12g00562 CST 5 138 Wox Gene Family AT1G46480 62.8 2.8e-43 172.6
Cma07g00209 CST 1 387 Wox Gene Family AT2G33880 50.1 1.0e-63 241.5
Cma18g00071 CCT,CST,ECH 1 174 Wox Gene Family AT3G18010 58.0 4.1e-48 189.5
Cma13g00993 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 57.0 1.3e-46 184.5
Cma11g00311 CCT,ECH 1 165 Wox Gene Family AT3G18010 56.0 2.2e-41 167.2
Cma05g00171 CST 10 181 Wox Gene Family AT1G46480 58.9 4.2e-47 185.3
Cma12g00562 CST 5 138 Wox Gene Family AT1G46480 62.8 2.8e-43 172.6
Cma07g00209 CST 1 387 Wox Gene Family AT2G33880 50.1 1.0e-63 241.5
Cma06g00070 . 4 234 Wox Gene Family AT3G03660 51.9 7.5e-51 198.4
Cma14g00454 . 14 246 Wox Gene Family AT3G03660 50.6 2.8e-42 169.9
Cma16g01272 . 136 409 Wox Gene Family AT4G35550 52.2 1.2e-71 267.3
Cma06g00150 . 28 265 Wox Gene Family AT4G35550 53.7 1.3e-65 247.3
Cma09g00047 CST 1 191 Wox Gene Family AT4G35550 60.7 5.3e-56 215.3
Cma01g02023 CST 40 181 Wox Gene Family AT4G35550 71.3 8.0e-52 201.4
Cma06g00150 . 28 167 Wox Gene Family AT1G20700 56.6 2.0e-39 159.8
Cma01g02023 CST 57 188 Wox Gene Family AT1G20700 58.5 5.8e-39 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35996 PF00046 Homeodomain 2.60E-19 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00562 Cma_Chr12 FPKM 85.041733 90.550476 40.292629 39.748058 5.863214 5.069573 4.364681 0.0 0.0 0.0