Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00565 ATGAAAATGTTGCCAAAGTTGTTATTGTTCGCGTTTCTCATTTTTCAGTTCTCGTTAGCTAAAATTGGGCCGCCCCGACCCAACCCAACCATCACACGGATCCGACCAAGGCCACCGCTGATCCCACCGTGCGTTAAGCTAATGCCACGCCGCCCCAAAACCAACCCGGGACCTCTAGCCAATGGAGCCACAATCCTTCACATAACTCAAGAGCTCAAAAGGAACATCACTTACGACCCATTTGGGTACACCAAGACATGGGTCGGCGACAATTACTGCCTCTTCAAAGGCTTCTTTTGCGACGTCGTTCCGGATCTCAATATCACTGGCCTGTCCTCCATTGACTTCAGTGGGGCCAGATTTGGTGGGCAGTTCTTGAACTTCTACCGCTTCATTCGTAACCTGCCGGATATTGCTATCTTTCATGCTAATTCCAATAACTTTAGTGGCGTTATCAAGCGGAATATTAACAAGTTGCGGTTCCTGTATGAGCTTGATTTGAGTAACAATAAGTTCCTTGGTGGGTTTCCTGGGTCTGTTCTTGGAGCCAATAAATTGTCGTTTGTGGACTTTCGTTTCAATGGTTATAATGGTTCGGTGCCGTATCGGTTGTTTAATATTGACACTGATGTGCTGTTTATTAACAACAATGGGTTCACTGGGACGATCCCGGCAGCTACGTTCGGTAACACGCCCGCACTCTATGTCACACTTGCTGCCAACAAGTTTACAGGTCCAATCCCACCAACAATTGGGCGGGCGTGGAGGACTCTACGCGAGGTACTATTCTTAAAAAACAGGCTCTCCGGTTGTCTGCCGTTCGAGATAGGTTATTTAGTAAAAGCCACAGTGTTGGACGCCAGCTCAAACATCATAACAGGTCCAATACCCAAGTCCTTAGGCTGCCTATTCAGTTTGCAAATCCTTAACTTAGCCAACAACCACTTGTACGGAGCCATTCCAGAGTCCCTCTGCAGCCTCCCACACGTCTACAACATAACCCTAAGCAACAACTATTTCACCCAAGTCGGCCCACAGTGCCGAAAGTTAATCACAGCTCAAAGGCTCCACGTCCAAGGAAACTGCCTTCCGGGCTTCCGGTGCCAAAAGACCGCAACCGAATGCGCCACTTTCTTCTGTAAACCAAGGAGCTGCCCACGAGCTAACACGTTCAACTATGTTCCTTGTAAACTCCCCGCGGTGGCTGCGGTTGCTTCAGTTCATGATATGGTTCCTCCTTCGCCTCGTTCTGAGATTTCGCAATACAACCTCTTGGGGACCAGCGTCCTCACTGGTATCTGCCAAGTGTTTAGCTCTGATACCATTTGTAACAGCTCAAACCCACCGCTAGCAGATATTATTCGACACATTCTCTCGATTTATTTTTCCAAATCTTCGACGAGAGAAAATTCCACATCTCGGCATCGTCAATCGTGGCTCTATGTTTCTCTATTCTCCAAAATTATCTGGGTTGTGAATTGTGGTATTTGGGCTAAGTATGAAGCAAGTGTATGCGTCCAATTGATGTTCAAACTTTTAGTGTTAAACTAG 1551 47.2 MKMLPKLLLFAFLIFQFSLAKIGPPRPNPTITRIRPRPPLIPPCVKLMPRRPKTNPGPLANGATILHITQELKRNITYDPFGYTKTWVGDNYCLFKGFFCDVVPDLNITGLSSIDFSGARFGGQFLNFYRFIRNLPDIAIFHANSNNFSGVIKRNINKLRFLYELDLSNNKFLGGFPGSVLGANKLSFVDFRFNGYNGSVPYRLFNIDTDVLFINNNGFTGTIPAATFGNTPALYVTLAANKFTGPIPPTIGRAWRTLREVLFLKNRLSGCLPFEIGYLVKATVLDASSNIITGPIPKSLGCLFSLQILNLANNHLYGAIPESLCSLPHVYNITLSNNYFTQVGPQCRKLITAQRLHVQGNCLPGFRCQKTATECATFFCKPRSCPRANTFNYVPCKLPAVAAVASVHDMVPPSPRSEISQYNLLGTSVLTGICQVFSSDTICNSSNPPLADIIRHILSIYFSKSSTRENSTSRHRQSWLYVSLFSKIIWVVNCGIWAKYEASVCVQLMFKLLVLN 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2946221 2951200 - CmaCh12G005650.1 Cma12g00565 305055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00565 516 Gene3D Ribonuclease Inhibitor 92 372 IPR032675 -
Cma12g00565 516 SUPERFAMILY L domain-like 75 363 - -
Cma12g00565 516 PANTHER LRR-FAMILY PROTEIN 32 417 - -
Cma12g00565 516 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 32 417 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00565 - - - csv:101204716 672.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma09g00252 Cma12g00565 CCT
Cma09g00252 Cma12g00565 ECH
Cma05g00165 Cma12g00565 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00565 Cma-Chr12:2946221 Cma19g00589 Cma-Chr19:6530100 8.39E-113 dispersed
Cma01g01822 Cma-Chr1:12079065 Cma12g00565 Cma-Chr12:2946221 2.09E-96 wgd
Cma11g01736 Cma-Chr11:11524791 Cma12g00565 Cma-Chr12:2946221 1.93E-108 wgd
Cma12g00565 Cma-Chr12:2946221 Cma19g00588 Cma-Chr19:6526942 6.83E-100 wgd
Cma12g00565 Cma-Chr12:2946221 Cma04g00478 Cma-Chr4:2437964 3.57E-101 wgd
Cma12g00565 Cma-Chr12:2946221 Cma05g00165 Cma-Chr5:706144 0 wgd
Cma12g00565 Cma-Chr12:2946221 Cma09g00252 Cma-Chr9:1059152 1.23E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g728 . . . . . . . . Cmo05g00165 Cmo12g00508 . Cma09g00252 Car01g01423 Car12g00526 Sed10g1995 . Cpe07g00496 Bhi04g00379 Tan02g0937 Cmetu01g0198 . Hepe08g1301 . Lcy13g2100 Cla08g01588 Cam08g2087 Cec08g1668 Cco08g1800 Clacu08g1773 . Cre08g1557 Cone4ag1593 . Cone17ag0857 Cone20ag0204 Lsi04g01529 . . Cme03g02068 . Blo18g00704 . Bda01g01603 Bpe02g01792 . Bma01g00662 . Sed13g1774 Cmo01g01877 Cmo09g00246 Cma12g00565 Cma05g00165 Car05g00142 Car09g00211 Cpe11g00139 Cpe02g00193 Bhi09g03293 Tan01g4744 Cmetu03g0867 . Hepe01g1791 Mch11g0324 . Cla05g02068 Cam05g2219 Cec05g2239 Cco05g2280 Clacu05g2212 Cmu05g2079 Cre05g2204 Lsi08g01492 Csa02g01928 Chy03g01561 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007826 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00565 Cma_Chr12 FPKM 21.94713 22.165442 0.731987 1.02554 0.481635 0.594529 0.412131 0.270352 0.400158 0.465575