Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00567 ATGGCGCCGCCGTATGCGCTTGATGCTCTGTTCTGCCCGGAGGAGCACTGGGAGGACCAAGAACAAGAACAACAACAGCAACAACGTTACACTAATTTAACGAACGAGGATCTGTTCTGGGAAAACGATGAACTAATTTCTCTTCTTGCTCGTGAGAAGCCTAATGAACTCTTTCAAATCATTCAGACTAACTCTTCTCTCGCCGCCGCTCGACGAGCCGCCGTCGAGTGGATGCTGAATGTCATTACCCACTACTCCTTCTCTGCTCTCACGGCTGTTCTCGCCGTCGATTACTTCGACAAGTTCTTGTCGTTTTTTCATTTTCAAACAGATAAGCCATGGATGTTTCACCTCGCTGCTGTTGCTTGTCTCTCTCTTGCTGCCAAAGTGGAGGAGACCCATGTGCCTCTTTTGTTGGACCTTCAAGTTGAAGTCAGTAGATATCTGTTTGAAGCCAAGACAATCAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTTCAATGGCGGATGAATCCTGTTACCCCATTTTCCTTTGTGGATCATATGTCAAGAAGGCTTGGATTCAAGGATCATATCTGCCGGGAAATTCATTGGTGGTGTGAACGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGTTTTCAAAGCAATGGAGCCCCACCTCGACGTTGAATACGATTACCAGCTTCTTAACATCCTCAAACTCGACAAGGGGAATGTGGAGGAATGCTGTAAACTAATCTCGGATGCATCGAGAAGAAACAGCCACCAATTTAAAAAACGGAAATTTGGGTCGGTTCCGAGCAGTCCAAACGGTGTTATGGACGTGTCATTCAGCTCCGACAGCTCAAACGACTCGTGGTCGGTGGCTTCGTCGGTTTCTTCCTCGCCGGATCCATTAACAAAGAAGAACAGAGCATTGGATCAATGTTTCGTCGACATTCCTCGCTAG 999 46.75 MAPPYALDALFCPEEHWEDQEQEQQQQQRYTNLTNEDLFWENDELISLLAREKPNELFQIIQTNSSLAAARRAAVEWMLNVITHYSFSALTAVLAVDYFDKFLSFFHFQTDKPWMFHLAAVACLSLAAKVEETHVPLLLDLQVEVSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDHMSRRLGFKDHICREIHWWCERTILSVILESDFMSFLPSVMATATMLHVFKAMEPHLDVEYDYQLLNILKLDKGNVEECCKLISDASRRNSHQFKKRKFGSVPSSPNGVMDVSFSSDSSNDSWSVASSVSSSPDPLTKKNRALDQCFVDIPR 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2965391 2967041 + CmaCh12G005670.1 Cma12g00567 305057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00567 332 Pfam Cyclin, C-terminal domain 173 297 IPR004367 -
Cma12g00567 332 SMART Cyclin_C_2 173 298 IPR004367 -
Cma12g00567 332 MobiDBLite consensus disorder prediction 290 318 - -
Cma12g00567 332 Gene3D - 172 261 - -
Cma12g00567 332 SMART cyclin_7 76 164 IPR013763 -
Cma12g00567 332 CDD CYCLIN 75 163 IPR013763 -
Cma12g00567 332 Gene3D - 56 171 - -
Cma12g00567 332 SUPERFAMILY Cyclin-like 41 171 IPR036915 -
Cma12g00567 332 PANTHER CYCLINS 20 321 IPR039361 -
Cma12g00567 332 Pfam Cyclin, N-terminal domain 60 171 IPR006671 -
Cma12g00567 332 SUPERFAMILY Cyclin-like 155 277 IPR036915 -
Cma12g00567 332 ProSitePatterns Cyclins signature. 71 102 IPR006671 -
Cma12g00567 332 PANTHER CYCLIN D3.1 PROTEIN 20 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00567 K14505 CYCD3; cyclin D3, plant - csv:101205442 449.129
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01813 Cma12g00567 CCT
Cma09g00261 Cma12g00567 CCT
Cma01g01813 Cma12g00567 ECH
Cma09g00261 Cma12g00567 ECH
Cma05g00163 Cma12g00567 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00567 Cma-Chr12:2965391 Cma16g00347 Cma-Chr16:1632612 2.33E-100 dispersed
Cma01g01813 Cma-Chr1:12047797 Cma12g00567 Cma-Chr12:2965391 1.23E-87 wgd
Cma11g01728 Cma-Chr11:11487243 Cma12g00567 Cma-Chr12:2965391 5.02E-67 wgd
Cma12g00567 Cma-Chr12:2965391 Cma19g00585 Cma-Chr19:6507822 4.97E-77 wgd
Cma12g00567 Cma-Chr12:2965391 Cma04g00476 Cma-Chr4:2429635 8.17E-91 wgd
Cma12g00567 Cma-Chr12:2965391 Cma05g00163 Cma-Chr5:698112 2.65E-165 wgd
Cma12g00567 Cma-Chr12:2965391 Cma07g00683 Cma-Chr7:3002281 6.18E-87 wgd
Cma12g00567 Cma-Chr12:2965391 Cma09g00261 Cma-Chr9:1092895 2.24E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g719 Blo01g01517 Blo12g00970 . . . . Bma04g00152 . Cmo05g00163 Cmo12g00510 Cma01g01813 Cma09g00261 Car01g01415 Car12g00528 Sed10g2003 Cpe06g00180 Cpe07g00498 Bhi04g00381 Tan02g0947 Cmetu01g0988 . Hepe08g1303 . Lcy13g2102 Cla08g01590 Cam08g2089 Cec08g1670 Cco08g1802 Clacu08g1775 . Cre08g1559 . Cone7ag1351 Cone17ag0862 Cone20ag0209 Lsi04g01520 Csa04g02445 . Cme03g02070 Blo17g00869 Blo18g00706 . . Bpe02g01789 Bpe05g00034 Bma01g00666 . Sed11g0930 Cmo01g01869 Cmo09g00254 Cma12g00567 Cma05g00163 Car05g00140 Car09g00219 Cpe11g00137 Cpe02g00199 Bhi09g03276 Tan01g4734 Cmetu07g1860 . Hepe01g1799 Mch11g0329 . Cla05g02076 Cam05g2226 Cec05g2245 Cco05g2287 Clacu05g2220 Cmu05g2087 Cre05g2211 Lsi08g01495 Csa02g01926 Chy07g00160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005600 0 1 3 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00567 Cma_Chr12 FPKM 9.294248 10.230748 0.881525 0.772038 30.995724 26.813984 32.938671 8.809071 9.03523 8.850126