Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00570 ATGGCTGGTCGAGGTGGGGTAGAGAACAATCAAAAGGGGAAACTTGAGTGGGATGGGAAGGTCCCATTAGAGTGTCAATCCGACCCATCCATCCTACGGTTGAACCCTGCACGCCAATGGGAAATTGCACAGGAACCACTCCATTTGGGGATTGACATCGGCAAAACTCCAGGGATTGGTCCGGGAATACCATTTGCTCACCAGTTCAAAGCAAAAGCTGGACAAAAGGCAGGCATCGTGGGTTTAGTTCCTTGTGCTAGAGGGGGCACTTTAATTGAACAATGGATTAAAAACCCTAGCAATCCTAGTGCAACTTTTTACCAAAATTTCATTGAACGAATTAAAACATCAGAAAAAGAAGGTGGGGTTGTGCGTGCTTTGTTTTGGTATCAAGGAGAGAGCGATGCGGCTATGAGTGACACTGCTCACAGATACAAAGACAACTTAAAGAAGTTCATCACCGACATCCGCAATGATATAAAACCTAGATTTTTACCTGTCATTATTGTTAAGATATCCATGTATGACTTTTTTATGAAGCACGATACTCATGATTTGCCCGCAGTGAGAGCAGCTGAAGATGCGGTCCAGAAAGAGCTTCCAGACATCATTACTATCGACTCTTGGGAGTTGCCTATAAACTTTACCACATTTGAAGGCTTTTGCTTGGATCACGGTCATTTTAATACAGCAACTGAGATTGCTTTGGGTAAATGGTTGGCTGACACATATCTGGCCCACTATAGCCATTTACTCTGA 759 43.74 MAGRGGVENNQKGKLEWDGKVPLECQSDPSILRLNPARQWEIAQEPLHLGIDIGKTPGIGPGIPFAHQFKAKAGQKAGIVGLVPCARGGTLIEQWIKNPSNPSATFYQNFIERIKTSEKEGGVVRALFWYQGESDAAMSDTAHRYKDNLKKFITDIRNDIKPRFLPVIIVKISMYDFFMKHDTHDLPAVRAAEDAVQKELPDIITIDSWELPINFTTFEGFCLDHGHFNTATEIALGKWLADTYLAHYSHLL 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2981080 2981838 + CmaCh12G005700.1 Cma12g00570 305060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00570 252 SUPERFAMILY SGNH hydrolase 21 248 - -
Cma12g00570 252 Gene3D SGNH hydrolase 1 249 IPR036514 -
Cma12g00570 252 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 1 248 - -
Cma12g00570 252 PANTHER BNACNNG62850D PROTEIN 1 248 - -
Cma12g00570 252 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 1 245 IPR005181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00570 - - - cmax:111471851 466.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01811 Cma12g00570 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00570 Cma-Chr12:2981080 Cma12g00572 Cma-Chr12:2991338 0 dispersed
Cma12g00569 Cma-Chr12:2975951 Cma12g00570 Cma-Chr12:2981080 0 tandem
Cma12g00570 Cma-Chr12:2981080 Cma12g00571 Cma-Chr12:2986209 0 tandem
Cma08g00762 Cma-Chr8:4576035 Cma12g00570 Cma-Chr12:2981080 7.71E-137 transposed
Cma12g00555 Cma-Chr12:2890132 Cma12g00570 Cma-Chr12:2981080 1.30E-25 transposed
Cma01g01811 Cma-Chr1:12042083 Cma12g00570 Cma-Chr12:2981080 1.40E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g716 . . . . . . . . . Cmo12g00513 Cma01g01811 . Car01g01413 . Sed10g2010 . . Bhi04g00383 Tan02g0958 Cmetu01g1629 . Hepe03g0733 . Lcy13g2107 Cla08g01592 Cam08g2092 Cec08g1673 Cco08g1804 Clacu08g1777 . . . . Cone17ag0865 . Lsi04g01518 . . Cme03g02072 . . . . . . . . Sed01g2693 Cmo01g01867 . Cma12g00570 . . . . Cpe02g00201 Bhi09g03274 Tan01g4732 Cmetu07g0030 . Hepe01g1801 Mch11g0331 . Cla05g02078 Cam05g2228 Cec05g2247 Cco05g2289 Clacu05g2222 Cmu05g2089 Cre05g2213 Lsi08g01498 Csa02g01924 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000128 0 5 0 0 0 8 1 8 7 3 6 7 11 6 8 12 7 1 11 7 5 24 17 10 14 13 7 4 12 0 214