Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00572 ATGGCTGGTCGAGGTGGGGTAGAGAACAATCAAAAGGGGAAACTTGAGTGGGATGGGAAGGTCCCATTAGAGTGTCAATCCGACCCATCCATCCTACGGTTGAACCCTGCACGCCAATGGGAAATTGCACAGGAACCACTCCATTTGGGGATTGACATCGGCAAAACTCCAGGGATTGGTCCGGGAATACCATTTGCTCACCAGTTCAAAGCAAAAGCTGGACAAAAGGCAGGCATCGTGGGTTTAGTTCCTTGTGCTAGAGGGGGCACTTTAATTGAACAATGGATTAAAAACCCTAGCAATCCTAGTGCAACTTTTTACCAAAATTTCATTGAACGAATTAAAACATCAGAAAAAGAAGGTGGGGTTGTGCGTGCTTTGTTTTGGTATCAAGGAGAGAGCGATGCGGCTATGAGTGACACTGCTCACAGATACAAAGACAACTTAAAGAAGTTCATCACCGACATCCGCAATGATATAAAACCTAGATTTTTACCTGTCATTATTGTTAAGATATCCATGTATGACTTTTTTATGAAGCACGATACTCATGATTTGCCCGCAGTGAGAGCAGCTGAAGATGCGGTCCAGAAAGAGCTTCCAGACATCATTACTATCGACTCTTGGGAGTTGCCTATAAACTTTACCACATTTGAAGGCTTTTGCTTGGATCACGGTCATTTTAATACAGCAACTGAGATTGCTTTGGGTAAATGGTTGGCTGACACATATCTGGCCCACTATAGCCATTTACTCTGA 759 43.74 MAGRGGVENNQKGKLEWDGKVPLECQSDPSILRLNPARQWEIAQEPLHLGIDIGKTPGIGPGIPFAHQFKAKAGQKAGIVGLVPCARGGTLIEQWIKNPSNPSATFYQNFIERIKTSEKEGGVVRALFWYQGESDAAMSDTAHRYKDNLKKFITDIRNDIKPRFLPVIIVKISMYDFFMKHDTHDLPAVRAAEDAVQKELPDIITIDSWELPINFTTFEGFCLDHGHFNTATEIALGKWLADTYLAHYSHLL 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2991338 2992096 + CmaCh12G005720.1 Cma12g00572 305062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00572 252 SUPERFAMILY SGNH hydrolase 21 248 - -
Cma12g00572 252 Gene3D SGNH hydrolase 1 249 IPR036514 -
Cma12g00572 252 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 1 248 - -
Cma12g00572 252 PANTHER BNACNNG62850D PROTEIN 1 248 - -
Cma12g00572 252 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 1 245 IPR005181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00572 - - - cmax:111471851 466.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00570 Cma-Chr12:2981080 Cma12g00572 Cma-Chr12:2991338 0 dispersed
Cma12g00572 Cma-Chr12:2991338 Cma12g00747 Cma-Chr12:4612912 1.51E-173 dispersed
Cma12g00571 Cma-Chr12:2986209 Cma12g00572 Cma-Chr12:2991338 0 tandem
Cma12g00572 Cma-Chr12:2991338 Cma12g00573 Cma-Chr12:2996467 2.74E-07 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g715 . Blo12g00972 . Bda03g00197 . Bpe04g00169 Bma04g00150 . . Cmo12g00515 . . . . . . Cpe07g00500 Bhi04g00386 . . . Hepe03g0729 . Lcy13g2109 Cla08g01593 Cam08g2093 Cec08g1674 Cco08g1805 Clacu08g1778 . Cre08g1561 . . . Cone20ag0211 . Csa04g02447 . Cme03g02074 . . . . . Bpe05g00378 . . . . . Cma12g00572 . . . . . . . . . . . . . . . . . . . Lsi08g01499 Csa02g01923 Chy07g00162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000128 0 5 0 0 0 8 1 8 7 3 6 7 11 6 8 12 7 1 11 7 5 24 17 10 14 13 7 4 12 0 214
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00572 Cma_Chr12 FPKM 0.022661 0.0 0.0 0.068964 0.0 0.0 0.0 0.26321 0.168178 0.07365
Cma12g00572 Cma_Chr12 FPKM 0.022661 0.0 0.0 0.068964 0.0 0.0 0.0 0.26321 0.168178 0.056849
Cma12g00572 Cma_Chr12 FPKM 0.022661 0.0 0.0 0.068964 0.0 0.0 0.0 0.282027 0.152788 0.07365
Cma12g00572 Cma_Chr12 FPKM 0.022661 0.0 0.0 0.068964 0.0 0.0 0.0 0.282027 0.168178 0.056849