Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma12g00577 | ATGGCTGAGACTCAGAACTCTGTCCGTGTTACTCGTGCTTCCAAGAAGAGAGCTACGATGGCTTCCATGGCCGAGGATCAGCCCGCCACTAAAAAGCGGGTGGTTCTTGGAGAGCTTTCGAATATTCAGAACGTTACTGGCTCACTGCCACAGAAGAGAAGGGCCAAATCTCAGATTACCAAATGCAAGCCTAAGAAGAGAACTAAGGTTTGTGTTGCTCCGACGATCAAGGCGGCTGTTCTTGAAGATAATGAACCGAAGTTGAGTATTGATGATATCTTGGACGATCCTGAGATGAAGGGACCTTATTCCTCGGATATCTATTCTTATCTTCGCATAATGGAGGCGGAACCGAAAAGAAGGCCAATTCCTAATTACATAGAGAAGATTCAGACGGATGTAAGTGCCAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTTGCTGAGGAATACAAACTCGGCCCCGATTCTCTGTATCTATCCATCTCTTACATCGATAGGTACCTATCAATGAACATCCTCAGTAGGCAAAGGCTTCAATTGTTGGGCGTATCTTCAATGCTGATTGCCTCGAAGTATGAAGAGATCACTCCTCCACATGTGGAAGATTTCTGCTACATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAAATGGAGGCTGATATACTTAAGTCTTTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAACACCAAGTCTGCAGTTGGAATTCCTGGGTCATTACCTTGCTGAGCTTAGCCTACTGGATTATAATTTTGTTAAGTTCTTGCCTTCTTTGGTTGCTGCTTCAGCTGTGTTTCTTGCAAAATTCATCATGTGGCCAAAGCTGCATCCTTGGGGTTCAAACATACAACAATACACAGGCTACAAGCCAGCTGATCTGAGGTCGTCTGTGCTTTTGTTACATGATTTGTACATGGCCAGAAGAGGAGGGTCTCTGATAGCTGTGAGAGAGAAATACAAGTTGCATATGTTCAAATGTGTTGCAATGATGCCTTCACCCCCTGAGATACCGTTTTCCTATTTTGAAGAAGCTTAG | 1116 | 43.37 | MAETQNSVRVTRASKKRATMASMAEDQPATKKRVVLGELSNIQNVTGSLPQKRRAKSQITKCKPKKRTKVCVAPTIKAAVLEDNEPKLSIDDILDDPEMKGPYSSDIYSYLRIMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGPDSLYLSISYIDRYLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNIAQEDFKTPSLQLEFLGHYLAELSLLDYNFVKFLPSLVAASAVFLAKFIMWPKLHPWGSNIQQYTGYKPADLRSSVLLLHDLYMARRGGSLIAVREKYKLHMFKCVAMMPSPPEIPFSYFEEA | 371 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3019501 | 3021743 | - | CmaCh12G005770.1 | Cma12g00577 | 305067 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma12g00577 | 371 | Gene3D | - | 122 | 235 | - | - | |
| Cma12g00577 | 371 | PIRSF | Cyclin_A_B_D_E | 1 | 365 | IPR039361 | - | |
| Cma12g00577 | 371 | SMART | cyclin_7 | 144 | 228 | IPR013763 | - | |
| Cma12g00577 | 371 | SMART | cyclin_7 | 241 | 329 | IPR013763 | - | |
| Cma12g00577 | 371 | Pfam | Cyclin, N-terminal domain | 106 | 234 | IPR006671 | - | |
| Cma12g00577 | 371 | Gene3D | - | 106 | 356 | - | - | |
| Cma12g00577 | 371 | SUPERFAMILY | Cyclin-like | 237 | 362 | IPR036915 | - | |
| Cma12g00577 | 371 | SUPERFAMILY | Cyclin-like | 95 | 234 | IPR036915 | - | |
| Cma12g00577 | 371 | PANTHER | CYCLIN-A3-1-RELATED | 24 | 370 | - | - | |
| Cma12g00577 | 371 | PANTHER | CYCLINS | 24 | 370 | IPR039361 | - | |
| Cma12g00577 | 371 | CDD | CYCLIN | 138 | 227 | IPR013763 | - | |
| Cma12g00577 | 371 | ProSitePatterns | Cyclins signature. | 139 | 170 | IPR006671 | - | |
| Cma12g00577 | 371 | SMART | Cyclin_C_2 | 237 | 360 | IPR004367 | - | |
| Cma12g00577 | 371 | Pfam | Cyclin, C-terminal domain | 237 | 359 | IPR004367 | - | |
| Cma12g00577 | 371 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Cma12g00577 | 371 | CDD | CYCLIN | 237 | 328 | IPR013763 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma09g00270 | Cma12g00577 | CCT | |
| Cma01g01803 | Cma12g00577 | CCT | |
| Cma01g01803 | Cma12g00577 | ECH | |
| Cma09g00270 | Cma12g00577 | ECH | |
| Cma05g00158 | Cma12g00577 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma12g00577 | Cma-Chr12:3019501 | Cma15g00658 | Cma-Chr15:3138809 | 7.44E-106 | dispersed | |
| Cma01g01803 | Cma-Chr1:12023071 | Cma12g00577 | Cma-Chr12:3019501 | 1.96E-165 | wgd | |
| Cma11g01716 | Cma-Chr11:11366810 | Cma12g00577 | Cma-Chr12:3019501 | 5.79E-98 | wgd | |
| Cma12g00577 | Cma-Chr12:3019501 | Cma19g00567 | Cma-Chr19:6402662 | 2.37E-99 | wgd | |
| Cma12g00577 | Cma-Chr12:3019501 | Cma05g00158 | Cma-Chr5:686175 | 0 | wgd | |
| Cma12g00577 | Cma-Chr12:3019501 | Cma09g00270 | Cma-Chr9:1114199 | 7.54E-153 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma12g00577 | K06627 | - | csv:101206145 | 644.425 |