Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00578 ATGGCAGATTCTCCTCCTCCTCCACACATGATCCACTTCTTTTGTGTTTTCATTTTAGCTTTTGCAGCTTCTCTTGGATCATCCATCTCGACCCTTGAATCAGACAAGCAAGCTTTAACCTCCCTCAAGTCAGGATTCAATCCTCTCCATCTTCACCACCCTTTATCTTCATGGAATCAAAACTCATCGCCATGTAATTGGACAGGCGTTTCCTGCGATAAAGATGGAAAAAGAGTCATCGGCCTCGATCTTTCTGGGCTGGCGCTTGCAGGGTCTGTACATATTCAAATTGGCAATCTTTTGTTCCTCAAATCTCTTCAACTTCAAAATAACCAAATAACAGGTCAAATTCCTGTTCAAATTAGCAATCTTTCTCGCTTGAAAGTTCTTAATATGAGCTTCAATTACATAAGAGGTGCCCTCCCCTCCAACATGAGTGGAATGGCAGAGCTTGAGATTCTTGACTTGACTTCCAACAGAATCACAAGCCAAATTCCAGAAGAACTCAGCAGATTAACAAAGCTTAAAGTTTTGAACTTGGGACAGAATCATCTCTACGGTACAATTCCCCCATCTTTTGGGAACCTGTCTTCTCTCATAACCTTAAATTTAGGGACCAATTCAGTTGGTGGTTCGATTCCTTCTGAATTGGGTCGTCTTCAAAATTTGAAGAACTTGGTGATATCCATTAATAATTTCAGTGGCTTTGTTCCCCCAAGCATTTACAACATGTCTTCTTTGGTTACTTTGATCTTAGCTGCAAATCGTCTCCATGGAACACTCCCCAAGGATTTTGGAGATAACCTCCCAAATCTTTTGTTCTTCAACTTCTGTTTCAATAGATTTTCAGGAACAATCCCTGAATCAATGCACAATATGACCCAAATAAGAATTATACGGTTTGCTCACAACCTTTTCGAAGGCAAAATCCCACCAGGATTGGAGAATTTGCCTGATCTTCAAATGTACTATATTGGACACAACAAGATCGTTAGCTCAGGTCGAGATGGGCTTAGTTTCATCTCGTCTTTGACCAACAGCTCTCGTCTCACCTTCATAGCAGCTGATGAAAACTACTTAGAAGGTGTGATTCCTGAATCCATTGGAAACCTTTCCAAAGTCTTCTCAAGATTGTACATGGGAGGGAATCGAATATATGGGAATATTCCATCTTCAATTGGCAATCTTCGGAGCTTAACTTTGCTGAATTTGAACAAAAACAAGCTATCTGGGGAAATCCCACCTCAAATTGGCCAATTGGAGCAATTACAATTACTGGGTTTGGCTCAAAATCAGCTCTTTGGTAGAATTCCAAGCTCATTGGGAAGCCTTGGGAAACTAAACCATATTGATTTGTCGGGAAACAACCTTGTCGGGGACATCCCCAATTCTTTTGGAAACTTCACAAACTTGCTTGCAATGGATTTGTCCAGCAATAAGCTTAGTGGGGGAATACCCAAAGAGGCTCTAAATTTTCCTAGTTTGAGCATGATTTTGAATCTCTCCAACAATATGCTTAGTGGGAATTTACCTGAAGAAATCAAGTTCCTCAAAAACGTTGAGAAAATTGATATCTCTGAAAATCTGATCTCTGGCGAAATTCCTTCTTCGATCAGCGACTGCAAGAGCTTGGAGGTGTTGATAATGGCGAAGAACGAATTTTCAGGTCAAATTCCGAGTAGTCTTGGAAATATTTTGGGATTGCGAGCTTTGGATCTTTCCTCGAACAAACTTACAGGTCCTATTCCTAGGAATCTCCAAAATCGAACAGCTTTGCAGTTGTTGAATCTCTCATTTAACGACCTCGAAGGAGTAGCTTTTGAAGGTGGAGATTTAAAGAGAATCCCAAGTGTTTATTTAGAAGGAAATCCAAAGCTTTGTTTGCCATCGGTATGTGTAAATAACAAACCCCACAACGAAAAGAGATTTAAAATCATTACTTTAACAGTCGTCTTCTCAACATTAGCACTCTGTTTTACATTGGGAGCTTGGTTTTATCTGACCAAGAGAAAGCCAAGAACACCATTGTCAACAGATGAATTAAAAAGGCAACACGACATGGTCTCATACGCTGAGATTCGAGCCGCCACAGCAAATTTCAGCCATGAAAAATTAGTGGGAAAGGGAAGTTTTGGGTCAGTTTATAAGGGGTACCTGAATCAAGAACATGGCGTGGTTGCAATCAAGGTGTTGAACATTGAACGAACTGGGTATATTAGGAGCTTTTTAGCGGAGTGCGAGGCCTCGCGCAGTGTGCGGCATCGGAAGCTTGTGAAGCTCATTACGTCGTGCTCGAGTATAGACTTTGAAGGAAGGGATTTTAGAGCTCTGGTTTATGAGTTTTTGAGTAATGGAAGCTTGGCGGAGTGGATTCATGGGCAGAGGCGTCACTTGGATGGAAGTGGGCTGGGGTTTTTGGAGCGACTGAACATTGCCATTGATGTTTGTTCTGTGTTGGAGTACCTTCACCATGGCTCTGAAGTGCCCATTGTTCACTGTGATTTGAAGCCTTGTAATGTTCTCTTGGCTGAAGACATGACTGCCAAAGTTGGGGACTTCGGGTTGGCTCGGTTGTTGATCGAGAATGAAGGGAGCCCTTATTCTTCCATCGCTGACTCTCATGTTCTTAGGGGTTCCATTGGTTACATTCCTCCAGAATACGGCATGGGAAGAAAGGCAACCGTGGCGGGAGATGTATACAGTTTCGGGATAACTTTGTTGGAGCTTTTTACAGGGAGAAGTCCAACCCATGAAGATTTTAGAGGAGAACAGAATCTAACCAAATGGGTTGAGTCCAGTTGCTTAGGAGATTTGATGCAAACACTGGGCTCGCCTAATCAACAATTAAACATTGGCTTCCATTCACATAACGAAGGTCGGCAAATTGGTGAAGATAAGATGATGAAGTGCTTGATTGAAGTCATTGATGTTGGCATCTCATGCACGGCTGATTATGCTAATAGCCGCATTACGATGAAGGATGCTCTTTCCAGACTTGAAAATGCTAGACATTCCTTGCATAAAACCAAGTAG 3033 41.94 MADSPPPPHMIHFFCVFILAFAASLGSSISTLESDKQALTSLKSGFNPLHLHHPLSSWNQNSSPCNWTGVSCDKDGKRVIGLDLSGLALAGSVHIQIGNLLFLKSLQLQNNQITGQIPVQISNLSRLKVLNMSFNYIRGALPSNMSGMAELEILDLTSNRITSQIPEELSRLTKLKVLNLGQNHLYGTIPPSFGNLSSLITLNLGTNSVGGSIPSELGRLQNLKNLVISINNFSGFVPPSIYNMSSLVTLILAANRLHGTLPKDFGDNLPNLLFFNFCFNRFSGTIPESMHNMTQIRIIRFAHNLFEGKIPPGLENLPDLQMYYIGHNKIVSSGRDGLSFISSLTNSSRLTFIAADENYLEGVIPESIGNLSKVFSRLYMGGNRIYGNIPSSIGNLRSLTLLNLNKNKLSGEIPPQIGQLEQLQLLGLAQNQLFGRIPSSLGSLGKLNHIDLSGNNLVGDIPNSFGNFTNLLAMDLSSNKLSGGIPKEALNFPSLSMILNLSNNMLSGNLPEEIKFLKNVEKIDISENLISGEIPSSISDCKSLEVLIMAKNEFSGQIPSSLGNILGLRALDLSSNKLTGPIPRNLQNRTALQLLNLSFNDLEGVAFEGGDLKRIPSVYLEGNPKLCLPSVCVNNKPHNEKRFKIITLTVVFSTLALCFTLGAWFYLTKRKPRTPLSTDELKRQHDMVSYAEIRAATANFSHEKLVGKGSFGSVYKGYLNQEHGVVAIKVLNIERTGYIRSFLAECEASRSVRHRKLVKLITSCSSIDFEGRDFRALVYEFLSNGSLAEWIHGQRRHLDGSGLGFLERLNIAIDVCSVLEYLHHGSEVPIVHCDLKPCNVLLAEDMTAKVGDFGLARLLIENEGSPYSSIADSHVLRGSIGYIPPEYGMGRKATVAGDVYSFGITLLELFTGRSPTHEDFRGEQNLTKWVESSCLGDLMQTLGSPNQQLNIGFHSHNEGRQIGEDKMMKCLIEVIDVGISCTADYANSRITMKDALSRLENARHSLHKTK 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3023990 3028038 - CmaCh12G005780.1 Cma12g00578 305068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00578 1010 Gene3D Ribonuclease Inhibitor 336 636 IPR032675 -
Cma12g00578 1010 SUPERFAMILY L domain-like 377 629 - -
Cma12g00578 1010 SUPERFAMILY Protein kinase-like (PK-like) 678 1000 IPR011009 -
Cma12g00578 1010 SUPERFAMILY L domain-like 32 330 - -
Cma12g00578 1010 Pfam Leucine rich repeat 103 161 IPR001611 GO:0005515
Cma12g00578 1010 Gene3D Ribonuclease Inhibitor 269 335 IPR032675 -
Cma12g00578 1010 ProSitePatterns Protein kinases ATP-binding region signature. 706 729 IPR017441 GO:0005524
Cma12g00578 1010 PANTHER OS04G0122200 PROTEIN 22 1005 - -
Cma12g00578 1010 ProSiteProfiles Protein kinase domain profile. 700 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00578 1010 Gene3D Transferase(Phosphotransferase) domain 1 782 1010 - -
Cma12g00578 1010 SMART serkin_6 700 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00578 1010 Pfam Protein kinase domain 701 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00578 1010 SMART LRR_typ_2 172 195 IPR003591 -
Cma12g00578 1010 SMART LRR_typ_2 196 220 IPR003591 -
Cma12g00578 1010 SMART LRR_typ_2 444 467 IPR003591 -
Cma12g00578 1010 SMART LRR_typ_2 100 124 IPR003591 -
Cma12g00578 1010 SMART LRR_typ_2 517 541 IPR003591 -
Cma12g00578 1010 SMART LRR_typ_2 468 492 IPR003591 -
Cma12g00578 1010 SMART LRR_typ_2 244 268 IPR003591 -
Cma12g00578 1010 SMART LRR_typ_2 396 420 IPR003591 -
Cma12g00578 1010 SMART LRR_typ_2 148 171 IPR003591 -
Cma12g00578 1010 Gene3D Phosphorylase Kinase; domain 1 680 781 - -
Cma12g00578 1010 Pfam Leucine Rich Repeat 174 196 IPR001611 GO:0005515
Cma12g00578 1010 Pfam Leucine Rich Repeat 446 468 IPR001611 GO:0005515
Cma12g00578 1010 Pfam Leucine Rich Repeat 568 588 IPR001611 GO:0005515
Cma12g00578 1010 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Cma12g00578 1010 ProSiteProfiles Leucine-rich repeat profile. 150 173 IPR001611 GO:0005515
Cma12g00578 1010 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 22 1005 - -
Cma12g00578 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Cma12g00578 1010 Gene3D Ribonuclease Inhibitor 183 268 IPR032675 -
Cma12g00578 1010 Gene3D Ribonuclease Inhibitor 30 182 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00578 - - - csv:101219969 1477.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00578 Cma-Chr12:3023990 Cma12g00583 Cma-Chr12:3046715 0 dispersed
Cma12g00764 Cma-Chr12:4777825 Cma12g00578 Cma-Chr12:3023990 5.20E-07 dispersed
Cma12g00578 Cma-Chr12:3023990 Cma12g00580 Cma-Chr12:3029344 0 proximal
Cma04g01692 Cma-Chr4:8508752 Cma12g00578 Cma-Chr12:3023990 4.47E-08 transposed
Cma12g00578 Cma-Chr12:3023990 Cma05g00156 Cma-Chr5:681102 1.50E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g690 . . . . . . . . . . . . . . . . Cpe07g00506 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00578 . Car05g00136 . . . . . . . . . . . . . . . . . Lsi08g01506 Csa02g01915 Chy03g01570 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000052 15 13 4 11 4 8 7 7 11 17 9 10 8 7 14 8 11 4 7 11 14 16 4 8 4 14 8 18 7 5 284
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68954 PF00069 Pkinase 3.50E-37 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00578 Cma_Chr12 FPKM 0.171739 0.302424 0.959745 0.927189 0.415487 0.238404 0.362531 4.640493 4.001935 5.064584