Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00586 ATGGCTTCGAGTTTCGATCGCTGGGAAAAGGATCCGTTCTTCTCAGCCGCCGAGGAAGTTCAAGAATCTGCCGACAGAATGGAATCAACGTATAGGACGTGGGTACATGCCACGAAAGATGCCTCCAGCATTTGGAACTGTGATGAGATCGGTAGAGATTTACGCACTGCTCTTGGCACCACAAAATGGCAGTTAGACGAGTTTGAACGTGCCGTGAAAACGAGTTATGTTAATAGCACGAACGATGATGCGAGAGATAGACACCGGGAGTTTGTTGTAGCAATTGAGGATCAGATTTCAAAAACTCAAAGTTCATTACAAGACTTTTCTCAATCAAAGGGAGAATCCTCAATGCCTTGGATGCAGCTGGATGAAGGTGAAAGCAACGAGCTTGCGTTGTTTCTTTCGGGACCTTCAGCAGGTGAAGACAAAACCGTTAACAACGTTGTTAGTGATGATGAAAATCCACAAGGGACCGATGAAGAATTGGCACCAGCTTGTTCAAGTAATTCTCATGACTATATAGAGGAGAAGTCCCATGGACACCGGAGGACTGCTAGTGCTAGTCCTGACATTGGTTCCTGGAAGATTGCAATTTCTGGGGTTGATTTCCAACAATGTTCTCTAAGTGGACAACCCGAGAAACTTATACGAAAGATCCCGAGTGTTTCAGGGTTTTTAAATGCTGTTGAGTCTGCATCAAAATTCAAGTGGCCAAAGAATGCCTTTAGGAAGCTGAAAGTAGTTGATAGGCCTCAAGAAACTAGTTCGATGTTGTTGCAATCTCCTCAATCAGCTAGGGGTATAATTGCTGGATATGAAAGAAGTAAGAGTTGCTTAGATAGTTGCGATGATTTTTACGATAAGCAACTCTATGGCTGGTACGGATCTATTCAAAGACAGTTTCAAAGGTTTCTATATCAAATGCAGTATAGTCGGCCTGTTCAAGTGACGTTCTCAACGATTCTCATTATCTCAATCGTTCTGATTGTTCTTCGTGTGCTATGA 1008 43.15 MASSFDRWEKDPFFSAAEEVQESADRMESTYRTWVHATKDASSIWNCDEIGRDLRTALGTTKWQLDEFERAVKTSYVNSTNDDARDRHREFVVAIEDQISKTQSSLQDFSQSKGESSMPWMQLDEGESNELALFLSGPSAGEDKTVNNVVSDDENPQGTDEELAPACSSNSHDYIEEKSHGHRRTASASPDIGSWKIAISGVDFQQCSLSGQPEKLIRKIPSVSGFLNAVESASKFKWPKNAFRKLKVVDRPQETSSMLLQSPQSARGIIAGYERSKSCLDSCDDFYDKQLYGWYGSIQRQFQRFLYQMQYSRPVQVTFSTILIISIVLIVLRVL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3061750 3065341 - CmaCh12G005860.1 Cma12g00586 305076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00586 335 Gene3D - 9 109 - -
Cma12g00586 335 PANTHER EXPRESSED PROTEIN 1 333 - -
Cma12g00586 335 SUPERFAMILY t-snare proteins 10 107 IPR010989 GO:0016020|GO:0016192
Cma12g00586 335 PANTHER OS05G0443700 PROTEIN 1 333 - -
Cma12g00586 335 Pfam Syntaxin 6, N-terminal 11 101 IPR015260 GO:0016020|GO:0048193
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00586 - - - bhj:120075617 556.984
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00152 Cma12g00586 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00684 Cma-Chr5:3564582 Cma12g00586 Cma-Chr12:3061750 3.38E-39 dispersed
Cma11g00395 Cma-Chr11:1955841 Cma12g00586 Cma-Chr12:3061750 8.62E-43 dispersed
Cma12g00586 Cma-Chr12:3061750 Cma12g00879 Cma-Chr12:6646233 3.81E-33 dispersed
Cma12g00586 Cma-Chr12:3061750 Cma05g00152 Cma-Chr5:665069 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g674 . . . . . . . . Cmo05g00152 Cmo12g00523 . . . . Sed11g0927 . Cpe07g00508 Bhi04g00402 Tan02g1760 Cmetu03g1564 . Hepe08g1320 . Lcy13g2123 Cla08g01609 Cam08g2110 Cec08g1695 Cco08g1819 Clacu08g1795 . Cre08g1578 Cone4ag1608 Cone7ag1344 Cone17ag0875 Cone20ag0223 . . . Cme03g02090 Blo17g00868 Blo18g00713 . Bda01g01595 Bpe02g01782 Bpe05g00037 Bma01g00672 Bma05g00048 . . . Cma12g00586 Cma05g00152 Car05g00132 . Cpe11g00128 . . . . . . . . . . . . . . . Lsi08g01513 Csa02g01907 Chy03g01579 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003617 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 3 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00586 Cma_Chr12 FPKM 8.390737 9.319889 13.232696 12.721229 9.031694 8.583876 9.168385 13.035264 13.033958 13.208421