Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00590 ATGTCCAGGTCCCGAGTTTACGCCGACGTCAATGTTCATCGCCCCAGAGAATACTGGGATTACGAGTCTCTCGCCGTCCAATGGAGTGGTCAGGATGATTATGAGGTTGTCCGGAAAGTTGGAAGAGGAAAGTATAGCGAGGTATTTGAAGGTATAAATATCACCAACAATGAAAAGTGCATTATCAAGATTCTTAAGCCTGTCAAGAAGAAGAAGATAAAGAGGGAGATAAAAATATTACAGAATCTTTGTGGTGGCCCAAATGTTGTGAAACTGCTGGATATTGTCAGAGATCAGCACTCTAAAACTCCTAGCTTAATCTTTGAATATGTGAACAGTACAGATTTCAAAATTTTGTACCCTACGCTGACCGATTATGACATTCGCTACTATATATATGAGCTTTTGAAGGCATTGGATTACTGCCATTCTCAAGGCATAATGCATAGAGATGTAAAGCCTCACAATGTTATGATTGACCATGAACTGCGAAAACTTCGTTTGATTGATTGGGGTCTTGCTGAATTCTACCATCCTGGAAAAGAGTACAATGTTCGAGTAGCATCTAGGTATTTCAAAGGACCGGAACTTCTTGTAGATTTACAAGACTACGACTATTCCTTGGATATGTGGAGTCTGGGTTGTATGTTTGCTGGAATGATTTTTCGGAAGGAACCATTCTTCTATGGTCACGACAATCATGACCAGCTTGTCAAAATTGCCAAGGTTTTGGGGACAGATGAGTTGAATGCGTATCTGAACAAATATCAACTGATTCTTGATCCACAAATTGAAGCCCTTGTTGGAAGGCATAGCCGTAAGCCATGGTCAAGATTTATCAATGGTGATAACCAGCATCTTGTATCCCCTGAGGCAATTGATTTTCTGGATAAGCTTCTTCGATACGACCATCAAGATAGGCTCACTGCAAGAGAAGCAATGGCTCATCCATACTTCTTCCAGGTGAGAACTGCGGAGAACAGCAGGCTGCGAACGCAATAA 1002 41.42 MSRSRVYADVNVHRPREYWDYESLAVQWSGQDDYEVVRKVGRGKYSEVFEGINITNNEKCIIKILKPVKKKKIKREIKILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKILYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYQLILDPQIEALVGRHSRKPWSRFINGDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFFQVRTAENSRLRTQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3077997 3083286 - CmaCh12G005900.1 Cma12g00590 305080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00590 333 SUPERFAMILY Protein kinase-like (PK-like) 6 323 IPR011009 -
Cma12g00590 333 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 333 IPR045216 GO:0004674|GO:0006468
Cma12g00590 333 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Cma12g00590 333 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Cma12g00590 333 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 1 333 - -
Cma12g00590 333 CDD STKc_CK2_alpha 15 319 IPR045216 GO:0004674|GO:0006468
Cma12g00590 333 Gene3D Transferase(Phosphotransferase) domain 1 111 319 - -
Cma12g00590 333 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00590 333 SMART serkin_6 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00590 333 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00590 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00590 K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1] - csv:101207500 656.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00663 Cma-Chr7:2898677 Cma12g00590 Cma-Chr12:3077997 0 dispersed
Cma12g00590 Cma-Chr12:3077997 Cma08g00922 Cma-Chr8:5756954 9.80E-43 dispersed
Cma03g00937 Cma-Chr3:6699385 Cma12g00590 Cma-Chr12:3077997 0 transposed
Cma12g00590 Cma-Chr12:3077997 Cma03g00926 Cma-Chr3:6664468 0 wgd
Cma12g00590 Cma-Chr12:3077997 Cma07g00658 Cma-Chr7:2871560 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g668 . . . . . . . . . Cmo12g00528 . . . Car12g00534 Sed14g1515 . Cpe07g00511 Bhi04g00405 Tan02g1754 Cmetu11g0428 . Hepe08g1323 . Lcy13g2126 Cla08g01612 Cam08g2113 Cec08g1699 Cco08g1822 Clacu08g1798 . Cre08g1581 . . . . . . . Cme03g02093 . . . . . . . . . . . Cma12g00590 . . . . . . . . . . . . . . . . . . . Lsi08g01516 Csa02g01904 Chy03g01582 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000622 5 3 4 4 5 3 4 3 3 3 3 3 5 2 3 3 3 5 3 3 3 4 3 3 2 3 3 5 4 3 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68958 PF00069 Pkinase 6.80E-66 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00590 Cma_Chr12 FPKM 21.325727 19.477377 24.505316 25.144165 24.532642 23.309128 26.465488 14.849806 16.653524 17.749067