Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00597 ATGCCGAACCTTCTAAGTTCTCTGCACGCGTTTCTCGCACGTGTCTCCCCGCCCCTCCGCTCCGCTTCCCGAGCCTCACTCCAGGTGTGTTCCCTCTCCCTTATCCCTTCCCTTTATAATCCCCCTTTCCCCAGATTCCCCTCTCGAACCTCCGACCTCCACACCCCGCCTCCTCTTCTTCTGCAACCAAACAACCCCGATTCTTTTCCGGCCATGGGGACGGAGAGTCCCGTTAATTTTACTTATATGGGCCGGACCTTTGATGATCTCACCAACGGTCATAGTTCTGGGGCGTTTAGCGACTGTAATAGTGATAGATCCGGGGAATTTCCCACGGCGGCGTCGCAGGGCCGTCGGCTTTTGATTGCTTGTGCTTCTGATAACTCCGACGACCTAATTCGTCAACTGGTTATGGACCTCCAGTCCTGTTCGATTGAGGAGCAGAAGCAAGCGGCTATGGAGATTAGACTTCTCGCTAAGAACAAACCGGAGAATCGATTGAAGATTGCGAAAGCTGGAGCGGTGAGGCCGTTGATTTCGTTGATATCGTGTTCGGATCCGCAGCTTCAAGAGTACGGCGTGACGGCGATTTTGAATCTCTCGTTGTGCGATGAGAACAAGGAGCAAATAGCGGCGTCTGGTGCGATTAAGCCTCTGGTTCGAGCGCTGATGTCGGGAACTCCTACGGCGAAGGAGAACGCCGCTTGTGCTTTACTACGGCTATCGCAAATGGAGGAGAACAAGATTGCAATCGGACGGTGCGGAGCGATTCCGCTTTTGGTGAATCTGTTAGAGAACGGCGGATTTCGCGGAAAGAAGGACGCATCGACGGCTCTGTATTCACTGTGCTCGGTTAAGGAGAACAAAATCAGAGCAGTAAAAGCGGGAATCATGAGGCCGTTAGTGGAATTAATGGCGGATTTCGGGTCAAACATGGTGGATAAGTCCGCGTTCGTGTTGAGCGTATTGGTATCGTTGTCAGAGGCGAGGACGGCGCTGGTAGAAGAAGGCGGAATTCCGGTACTAGTGGAATTAGTTGAAGACGGAACACAACGACAAAAGGAGATCGCGGCGGTGATTTTGCTGCAGGTTTGCGAGGACAGTGTCCTTTACCGTACAATGGTAGCCCGTGAAGGAGCAATCCCGCCGCTAATCGCCTTGACACAGTCCGGCACCAATCGCGCCAAACAAAAGGCGGAGAAACTGATAGAGCTTCTACGGCTACCAAGATCCGGCAACTGCGCTGCCACCACCTCAGATGTGTCAGTCTAG 1272 53.07 MPNLLSSLHAFLARVSPPLRSASRASLQVCSLSLIPSLYNPPFPRFPSRTSDLHTPPPLLLQPNNPDSFPAMGTESPVNFTYMGRTFDDLTNGHSSGAFSDCNSDRSGEFPTAASQGRRLLIACASDNSDDLIRQLVMDLQSCSIEEQKQAAMEIRLLAKNKPENRLKIAKAGAVRPLISLISCSDPQLQEYGVTAILNLSLCDENKEQIAASGAIKPLVRALMSGTPTAKENAACALLRLSQMEENKIAIGRCGAIPLLVNLLENGGFRGKKDASTALYSLCSVKENKIRAVKAGIMRPLVELMADFGSNMVDKSAFVLSVLVSLSEARTALVEEGGIPVLVELVEDGTQRQKEIAAVILLQVCEDSVLYRTMVAREGAIPPLIALTQSGTNRAKQKAEKLIELLRLPRSGNCAATTSDVSV 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3115717 3117885 - CmaCh12G005970.1 Cma12g00597 305087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00597 423 Pfam Armadillo/beta-catenin-like repeat 163 201 IPR000225 GO:0005515
Cma12g00597 423 Pfam Armadillo/beta-catenin-like repeat 245 284 IPR000225 GO:0005515
Cma12g00597 423 Pfam Armadillo/beta-catenin-like repeat 204 242 IPR000225 GO:0005515
Cma12g00597 423 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 173 215 IPR000225 GO:0005515
Cma12g00597 423 Gene3D - 290 416 IPR011989 -
Cma12g00597 423 PANTHER U BOX DOMAIN-CONTAINING 72 415 - -
Cma12g00597 423 SMART arm_5 162 202 IPR000225 GO:0005515
Cma12g00597 423 SMART arm_5 326 366 IPR000225 GO:0005515
Cma12g00597 423 SMART arm_5 285 325 IPR000225 GO:0005515
Cma12g00597 423 SMART arm_5 203 243 IPR000225 GO:0005515
Cma12g00597 423 SMART arm_5 244 284 IPR000225 GO:0005515
Cma12g00597 423 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 72 415 - -
Cma12g00597 423 Gene3D - 113 289 IPR011989 -
Cma12g00597 423 SUPERFAMILY ARM repeat 130 403 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00597 - - - csv:101208714 630.172
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00141 Cma12g00597 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00350 Cma-Chr7:1505641 Cma12g00597 Cma-Chr12:3115717 3.59E-93 dispersed
Cma12g00597 Cma-Chr12:3115717 Cma20g00982 Cma-Chr20:5237544 9.35E-83 dispersed
Cma12g00597 Cma-Chr12:3115717 Cma05g00141 Cma-Chr5:628954 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g651 . . . . . . . . Cmo05g00143 Cmo12g00537 . . . Car12g00540 Sed10g1203 . Cpe07g00515 Bhi04g00413 Tan02g1737 Cmetu03g0693 . Hepe08g1331 . Lcy13g2131 Cla08g01619 Cam08g2121 Cec08g1706 Cco08g1830 Clacu08g1806 . Cre08g1588 . . Cone17ag0886 Cone20ag0233 . . . Cme03g02100 . . . . . . . . . . . Cma12g00597 Cma05g00141 Car05g00123 . Cpe11g00122 . . . . . . . . . . . . . . . Lsi08g01525 Csa02g01897 Chy03g01589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009336 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00597 Cma_Chr12 FPKM 10.849813 11.385205 30.796597 29.18461 6.226982 5.980343 5.55314 34.342228 36.566692 34.387566