Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00598 ATGGCAAATAAAAAGGCCGCGCCATTTTACCTCTTCGTCATGTTCTTCAGAATTTCAGATATGAAAATTAGAGAAAAATCCAGTAGCTTCAAATATCTCTCCAAGCTCAGTGGACTCTCCGTCGTCACCGCCAAGCCCAAGGACGTTCCTTCTTCTCCGGTAGGCTCCACGTCGCCGGAAATGGATCCCGGCATCTGGAGCCGACTTCCACCGGAACTTCTTGATCACGTACTCTCTTTTCTTCCTCTCAGAACCTGTTTTAACCTAAGATCGACTTGTAAGCATTTTGATTCTCTCTTGTATTCTCCTTCTTTCGTCTCTAAGCACTCTGATTCCTCTTTCTCCTCCTTCCTCTTGCTGGCGCATCCGCAATGTTTTCGTCAGTTACCTCTGTACGATTCTGCTCACGGAACTTGGCGGAGCTTGCCGCTCTCTGTTTCCGTTTCGCTTCCTTCTGGCATTCCTTCTACTGCTCTTGTTTCCACTGCCAACGGCCTCATTTTCACGCTCTTCTCCGGCTCGTCTCCTGTTTCCGTTCTGGTATTCGATTCCAGGGATCATTCCTGGCGAAAATTCGACAATTTCGCGCCGATTCTCGGGGATAATCATCGCCAAGAAGCTGCTTGCTATAATGGCCGTTTGTATTTTTTTACGCCAGAACCATTTTCTATTGTTACCTTCGATTTGGAAAATGGCGAGTGGGAGGAAACCGATATCGTAATGCCCGAGGATCTCACGTTTGTTAGATTAGTGAGCGATGGAGATAGGAAATTGTATATGATCGGTGGAATTGGTAGGAATGGGATTTCAAGGAGCTTGAAGCTATGGGAGTTTTCAGAACAGAGAAATTGGGTGGAAATTGAAAATGTGCCGCAGATGATTTGTAAGAAGTTCATGTCGATTTGTTACCACAATTACAAGCACGTTTATTGCTTTTGGCATCAGGGAACCATCTGTCTTTGTTGCCACACTTGGCCGGAGATTCTGTATTACAAATTGAGCAGGAGAACATGGCATTGGCTTCCCAAATGCCCTTCTCTTCCGGAAAGATGGAGCTGTGGTTTCAGATGGTTCTCATTTGTGCCAGAATTGGGCAACTTGGAATATGATAAAAGGATTGACAATTACAATGATGAAGGAAGGAAGAAACAGAAGGAAGATGAACAGATTGTAAACATCGATGGAGGACGCAATAGAGGCGACAGAAAGACTAGGAGACAATCGAGATATGTTATTTAA 1239 44.87 MANKKAAPFYLFVMFFRISDMKIREKSSSFKYLSKLSGLSVVTAKPKDVPSSPVGSTSPEMDPGIWSRLPPELLDHVLSFLPLRTCFNLRSTCKHFDSLLYSPSFVSKHSDSSFSSFLLLAHPQCFRQLPLYDSAHGTWRSLPLSVSVSLPSGIPSTALVSTANGLIFTLFSGSSPVSVLVFDSRDHSWRKFDNFAPILGDNHRQEAACYNGRLYFFTPEPFSIVTFDLENGEWEETDIVMPEDLTFVRLVSDGDRKLYMIGGIGRNGISRSLKLWEFSEQRNWVEIENVPQMICKKFMSICYHNYKHVYCFWHQGTICLCCHTWPEILYYKLSRRTWHWLPKCPSLPERWSCGFRWFSFVPELGNLEYDKRIDNYNDEGRKKQKEDEQIVNIDGGRNRGDRKTRRQSRYVI 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3121855 3130415 - CmaCh12G005980.1 Cma12g00598 305088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00598 412 SMART fbox_2 69 109 IPR001810 GO:0005515
Cma12g00598 412 SUPERFAMILY F-box domain 55 123 IPR036047 GO:0005515
Cma12g00598 412 PANTHER F-BOX/KELCH-REPEAT PLANT PROTEIN 65 169 - -
Cma12g00598 412 Gene3D - 55 105 - -
Cma12g00598 412 PANTHER F-BOX/KELCH-REPEAT PLANT PROTEIN 168 364 - -
Cma12g00598 412 ProSiteProfiles F-box domain profile. 63 117 IPR001810 GO:0005515
Cma12g00598 412 SUPERFAMILY Galactose oxidase, central domain 126 346 IPR011043 -
Cma12g00598 412 Pfam F-box domain 66 101 IPR001810 GO:0005515
Cma12g00598 412 Gene3D - 110 362 IPR015915 GO:0005515
Cma12g00598 412 PANTHER F-BOX/KELCH-REPEAT PROTEIN 65 169 - -
Cma12g00598 412 PANTHER F-BOX/KELCH-REPEAT PROTEIN 168 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00598 - - - csv:101208959 552.747
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00139 Cma12g00598 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00598 Cma-Chr12:3121855 Cma15g00216 Cma-Chr15:1064094 6.84E-19 dispersed
Cma12g00598 Cma-Chr12:3121855 Cma05g00139 Cma-Chr5:609753 8.30E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g649 . . . . . . . . Cmo05g00142 Cmo12g00538 . . . Car12g00542 Sed03g0283 . Cpe07g00516 Bhi04g00416 Tan02g1736 Cmetu03g0956 . Hepe08g1334 . Lcy13g2132 Cla08g01621 Cam08g2123 Cec08g1708 Cco08g1832 Clacu08g1809 . Cre08g1590 . Cone7ag1337 . . . . . Cme03g02102 . . . . . . . . . . . Cma12g00598 Cma05g00139 Car05g00121 . Cpe11g00120 . . . . . . . . . . . . . . . Lsi08g01527 Csa02g01895 Chy03g01591 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007973 0 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00598 Cma_Chr12 FPKM 0.0 1.064756 0.223237 0.0 0.52798 0.0 0.468415 0.142074 0.0 0.19866