Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00599 ATGTGGAAGGATATTAGAGATAGAGAAGCGGGAAAACTCCGCCCAAATTCTTTTGCTAATCGTGTTAAATCCGATCGAGTCAGCAGTCTGCAACTTTCCAATCATAAGGACATTGTCTCTCCCCATCGAGGTTCCGTCAACTCACTTCAGGTCGATTTGACGGAGGGGAGATATTTGTTATCTGGAGCATCAGATGCATCGGCTGCTGTTTTTGATATTCAACGTGCATCTCATTCTGAGGGTCTTATTGCAAAATACCAATGCCTTTTTGCAGTTGATAAGCAGCATGAACATGGACATAAATATGCAATTTCCTCGGCCATATGGTATCCCATTGATACTGGATTGTTTGTCACAGGTTCATATGATCATCACATTAATGTCTGGGATACAAATACAACTCAGGTGGTGGTGAACTTTAAATTGCCTGGAAAAGTCTATAGGACAGCCATGTCCTCTTTGGCAACATCACACATGCTGATTGCTGCTGGAACAGAAGATGTTCAAGTCCGCCTTTGTGATATTTCATCGGGGGCATTTTCTCACACCTTATCTGGACATCGTGATGGTGTAATGAGTGTAGAATGGTCAGCTTCTAGCGAGTGGGTTTTGATTACTGGCGGATGTGATGGAGCAATTCGTTTTTGGGACATCAGACGAGCTGGATGTTTTCGAGTTCTAGATCAGTCTCAATCCCAGCTCGGGCGACGTCCACCTATTTCAGGATGGACTGCAAATAAGGTCCCTCTCCTCCCTAGTTTGGCTATCACGCTATCAACATCTAAGTCCCATTTGGCCAGCCAAGGTTCAAATATGAAATCTCGCATACTTCATAAGAAACTAGCCACCAATGGAAACGCAACAAAGCCATCATCTACTACAGGTAAACTGCCAGCTAAGGGATCCACAAGGCAGAGGCTACACCCAGGGCTTTTGTCCAGCCAGGATCGAGCAGTTTCTCACTACGGTGCTGTTACTGGATTAAAAGTAACTGGAGATGGCATGTACCTTCTCAGTGCAGGTTCTGATTCAAGGTTAAAGTTGTGGGATGTCGAATCCGGGTGTAACACGCTCGTGAATTATGAAACCGTGAGATTACATACCAATAAGCCGTTGCAATTAGCCACATCTCAAGACTCAGCCCTTGTATTTGCTCCATGCATGGCAAATATTAAAGCATTTGATATGTGGACAGGGAAGGCATCCCTGACGCTTAGCGGCCATTACGAAGCTGTGAACTGTTGCTTGTATAGTTTCCAGGATCAGGAACTGTACACTGGTGGGAACGATAGGCAAATTCTCGTCTGGTCACCATCCCGGGACTCTACCGAACTGTGGACTCGCAGGATTGGGAATCCAGTGCAGACAAAGATAACTGGAGCGACTGATTGTCCTCTTCCACAAGGACGTTCGGTTTCAACGCTGATGCCATCCATAAAACTCTGCCCACCATGTACATAA 1461 45.52 MWKDIRDREAGKLRPNSFANRVKSDRVSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGASDASAAVFDIQRASHSEGLIAKYQCLFAVDKQHEHGHKYAISSAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVEWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPISGWTANKVPLLPSLAITLSTSKSHLASQGSNMKSRILHKKLATNGNATKPSSTTGKLPAKGSTRQRLHPGLLSSQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETVRLHTNKPLQLATSQDSALVFAPCMANIKAFDMWTGKASLTLSGHYEAVNCCLYSFQDQELYTGGNDRQILVWSPSRDSTELWTRRIGNPVQTKITGATDCPLPQGRSVSTLMPSIKLCPPCT 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3132120 3137436 - CmaCh12G005990.1 Cma12g00599 305089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00599 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 437 - -
Cma12g00599 486 ProSitePatterns Trp-Asp (WD) repeats signature. 337 351 IPR019775 -
Cma12g00599 486 SMART WD40_4 177 217 IPR001680 GO:0005515
Cma12g00599 486 SMART WD40_4 398 437 IPR001680 GO:0005515
Cma12g00599 486 SMART WD40_4 312 350 IPR001680 GO:0005515
Cma12g00599 486 SMART WD40_4 32 72 IPR001680 GO:0005515
Cma12g00599 486 SMART WD40_4 85 130 IPR001680 GO:0005515
Cma12g00599 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 139 IPR001680 GO:0005515
Cma12g00599 486 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Cma12g00599 486 Pfam WD domain, G-beta repeat 98 130 IPR001680 GO:0005515
Cma12g00599 486 Pfam WD domain, G-beta repeat 402 437 IPR001680 GO:0005515
Cma12g00599 486 Pfam WD domain, G-beta repeat 320 350 IPR001680 GO:0005515
Cma12g00599 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 133 - -
Cma12g00599 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 354 - -
Cma12g00599 486 SUPERFAMILY WD40 repeat-like 39 441 IPR036322 GO:0005515
Cma12g00599 486 PRINTS G protein beta WD-40 repeat signature 117 131 IPR020472 -
Cma12g00599 486 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Cma12g00599 486 PRINTS G protein beta WD-40 repeat signature 337 351 IPR020472 -
Cma12g00599 486 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 1 443 IPR042238 GO:0006283
Cma12g00599 486 Gene3D - 302 440 IPR015943 GO:0005515
Cma12g00599 486 Gene3D - 1 301 IPR015943 GO:0005515
Cma12g00599 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 226 IPR001680 GO:0005515
Cma12g00599 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 219 - -
Cma12g00599 486 MobiDBLite consensus disorder prediction 283 304 - -
Cma12g00599 486 ProSitePatterns Trp-Asp (WD) repeats signature. 204 218 IPR019775 -
Cma12g00599 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 437 IPR001680 GO:0005515
Cma12g00599 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 359 IPR001680 GO:0005515
Cma12g00599 486 MobiDBLite consensus disorder prediction 284 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00599 K10570 ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8 - csv:101209203 821.231
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00599 Cma-Chr12:3132120 Cma18g00348 Cma-Chr18:1865885 5.68E-06 dispersed
Cma12g00599 Cma-Chr12:3132120 Cma03g00866 Cma-Chr3:6430815 7.12E-07 transposed
Cma12g00599 Cma-Chr12:3132120 Cma14g00989 Cma-Chr14:5185502 1.23E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00599 Cma_Chr12 FPKM 11.972332 13.945919 17.802357 16.615911 15.865968 18.036449 14.929886 34.672764 35.764603 36.399391