Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00603 ATGGAGGACGCCTTTTCCAGATCCATCTCTGAGGTCTTGGGATTTTTTGGGGTTGACCCATCACAAGGTCTCACAGACGATCAGGTTTTGCATCATGCTAGAGTTTATGGAAAAAACGGTACGTTTTCCGACCCTTGTTCTAGACCCCAAGAGAGCAATATTCTTTCCCAACCGGCAAACCATCCTCCTCAGAAGCTCTTACAACTGGTTCCCACTGAACCAGATGGGGCCCCATTTTGGAAACTGATTTTGAAGCAGTTTGATGATTTACTAGTGAAGATATTAATTGTTGCAGCAGTTGTTTCTTTCCTATTGGCTTTGATAAATGGAGAGACAGGCATAATAGCATTTTTGGAGCCTTCAGTAATTCTAATGATATTGGCTGCAAATGCAGCAGTAGGAGTGATTACAGAAACAAATGCCGAAAAGGCTCTTGTGGAACTACGGGCATACCAGGCAGATATTGCTACTGTGATGAGAAATGGTTGCTTTTCAATACTTCCGGCTACAGAGCTTGTTCCTGGTGATATTGTAGAAGTTGCTGTGGGGTGCAAAATTCCTGCTGATATGCGAATGATTGAGATGCTTAGTAATCAGCTGCGTGTTGATCAAGCAATTCTTACAGGTGAGAGCTGCTCTGTTGAAAAAGAGCTGGAGGCCACAAGAGCAGTAAATGCTGTATATCAAGACAAGACAAATATTCTTTTTTCTGGCACCGTGGTTGTTGCTGGCAGGGCACGTGCTGTTGTGGTAGGAGTTGGTGCAAATACTGCTATGGGCAATATACGAGATTCTATATTGCAAACGGATGATGAGGTGACACCATTGAAAAAGAAGCTAGATGAGTTTGGTACTTTTCTGGCCAAGGTTATTGCTGGAATTTGTGCACTTGTATGGATAGTGAACATTGGTCACTTTCGTGATCCTTCTCATGGTGGGATTTTGAGTGGTGCAATACACTACTTCAAGATTGCAGTTGCTCTTGCTGTTGCAGCGATTCCTGAAGGACTACCTGCCGTTGTCACAACGTGTTTGGCTCTTGGCACCAAAAGAATGGCACGCCTGAATGCAATTGTGAGGTCTTTGCCATCTGTTGAGACTTTAGGCTGCACTACTGTTATATGTAGTGACAAGACTGGAACTTTGACTACGAATATGATGTCCGTCTCAAAGATTTGTGTGGTCCATTCTGTTTTGCATGGTCCACAACTTTCTGAGTACAATGTCAGCGGTACAACATACGCTCCTGATGGTACTATTTTTGACAGCACTGGAGTACAGCTTGAGTTTCCAGCTCAATTGCCTTGTATTCTACACATGGCAATGGGCTCTGCCCTCTGCAACGAGTCTACTTTGCAGTATAATCCAGATAAGGGGAACTACGAAAAAATTGGTGAATCAACTGAAGTAGCACTGCGTGTCTTTGCTGAAAAGGTTGGTCTTCCTGGTTTTACTTCAATGCCTTTTGCTCTAAATATGCTAAGCAAGCATGAGCGCGCATCCTATTGTAACCACCATTGGGAGAACCAGTTCAAAAAGATTTCTGTATTGGAATTTTCTCGTGATCGCAAGATGATGAGCATTTTATGTAGCAGAAACCAGTCACATATCCTTTTCTCCAAAGGTGCTCCTGAGAGCATTATTTCGAGATGCTCAAGTATCCTTTGCAATGAAGATGGTTCCACCAGTGTTTTAACTTCTAGTATTCGTGCTGAACTGGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGGTGCCTGGCTATAGCAATCAAATTGCTTCCTGTGAGTCAACAGAGTTTATCATTTGATGATGAGCAAGACCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCGAGAGAGGAAGTGAGAAATGCTATGCTTTCATGTATGAATGCTGGCATACGTGTTATAGTCGTAACTGGGGACAACAAGTCAACTGCTGAATCACTCTGCCGCAAGATTGGTGCTTTTGACCACTTGGTAGATCTAGCTGATCATTCTTTTACTGCTTCTGAATTTGAAGAGCTACCTGCAATGCAACAAACAATGGCATTGCAACGAATGGCACTCTTCACCAGGGTTGAACCTTCTCATAAGCAAATGCTTGTGGAGGCCTTACAACATCAGAATGAAGTGGTTGCTATGACAGGTGATGGTGTCAATGATGCACCTGCACTGAAGAAAGCTGATATCGGTATTGCCATGGGTTCAGGAACAGCAGTTGCCAAGAGTGCATCTGATATGGTCTTAGCTGATGACAATTTTGCTACTATTGTTGCGGCTGTTGCAGAGGGCAGAGCTATTTACAATAATACTAAGCAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTTTGTATATTTGTGGCAGCTGTTCTTGGAATACCAGAGACTCTTGCCCCTGTGCAACTTCTTTGGGTCAACTTGGTCACTGATGGATTGCCTGCAACTGCAATTGGATTTAATAAGCAAGACTCCGATGTAATGAAATCTAAGCCTCGAAAGGTGAATGAAGCTGTGGTGACTGGATGGTTGTTCTTTCGTTATTTGGTAATTGGAGCGTATGTTGGTCTTGCAACAATTGCTGGCTTCATATGGTGGTTTATATACTCCGACAGTGGTCCTAAGCTACCTTACGCTGAGTTGATGAGTTTTGATACTTGTTCAACAAGAGCGACAACATACCCTTGCAGTATATTTGAGGATCGGCATCCGTCAACTGTTTCTATGACTGTACTTGTTGTCGTCGAGATGTTCAATGCTTTAAATAATCTAAGCGAAAATCAATCTCTTCTTGTTATCCCTCCCTGGAGTAATTTATGGCTCGTTGCCTCCATTGTCATAACCATGATCCTTCACATGCTTATTATGTATGTGCGACCACTAGCTGTTCTTTTCTCTGTAACGCCATTATCTTGGGCTGAATGGACGATCGTTTTGTACCTTTCGTTTCCTGTTATAATTATTGATGAAATACTGAAGTTCTTTTCACGACGCTCCAGTGGCAGGTTGAGGCTTCCATTTAGATTCAGAAGGCATGAGTTGCTTCCAAAGAAGGAATTGCGTGACAAGTAG 3099 42.66 MEDAFSRSISEVLGFFGVDPSQGLTDDQVLHHARVYGKNGTFSDPCSRPQESNILSQPANHPPQKLLQLVPTEPDGAPFWKLILKQFDDLLVKILIVAAVVSFLLALINGETGIIAFLEPSVILMILAANAAVGVITETNAEKALVELRAYQADIATVMRNGCFSILPATELVPGDIVEVAVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELEATRAVNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGNIRDSILQTDDEVTPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGILSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVLHGPQLSEYNVSGTTYAPDGTIFDSTGVQLEFPAQLPCILHMAMGSALCNESTLQYNPDKGNYEKIGESTEVALRVFAEKVGLPGFTSMPFALNMLSKHERASYCNHHWENQFKKISVLEFSRDRKMMSILCSRNQSHILFSKGAPESIISRCSSILCNEDGSTSVLTSSIRAELEARFQSFAGNEMLRCLAIAIKLLPVSQQSLSFDDEQDLTFIGLVGMLDPPREEVRNAMLSCMNAGIRVIVVTGDNKSTAESLCRKIGAFDHLVDLADHSFTASEFEELPAMQQTMALQRMALFTRVEPSHKQMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKSKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFIYSDSGPKLPYAELMSFDTCSTRATTYPCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIVITMILHMLIMYVRPLAVLFSVTPLSWAEWTIVLYLSFPVIIIDEILKFFSRRSSGRLRLPFRFRRHELLPKKELRDK 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3149699 3176684 + CmaCh12G006030.1 Cma12g00603 305093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00603 1032 Pfam Cation transport ATPase (P-type) 445 554 - -
Cma12g00603 1032 Pfam E1-E2 ATPase 152 354 - -
Cma12g00603 1032 Gene3D - 372 765 IPR023214 -
Cma12g00603 1032 SFLD p-type atpase 356 773 IPR044492 -
Cma12g00603 1032 PANTHER CALCIUM-TRANSPORTING ATPASE 7 1009 - -
Cma12g00603 1032 Pfam Cation transporter/ATPase, N-terminus 73 102 IPR004014 -
Cma12g00603 1032 SUPERFAMILY HAD-like 608 769 IPR036412 -
Cma12g00603 1032 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 122 397 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00603 1032 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 691 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00603 1032 ProSitePatterns E1-E2 ATPases phosphorylation site. 377 383 IPR018303 -
Cma12g00603 1032 PRINTS H+-transporting ATPase (proton pump) signature 721 737 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00603 1032 PRINTS H+-transporting ATPase (proton pump) signature 752 777 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00603 1032 PRINTS H+-transporting ATPase (proton pump) signature 693 709 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00603 1032 SUPERFAMILY Calcium ATPase, transmembrane domain M 71 1008 IPR023298 -
Cma12g00603 1032 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 7 1009 - -
Cma12g00603 1032 TIGRFAM ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 83 875 IPR005782 GO:0005388|GO:0006816|GO:0016021
Cma12g00603 1032 MobiDBLite consensus disorder prediction 43 60 - -
Cma12g00603 1032 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 382 619 IPR023299 GO:0000166
Cma12g00603 1032 Gene3D - 385 622 IPR023299 GO:0000166
Cma12g00603 1032 PRINTS P-type cation-transporting ATPase superfamily signature 375 389 - -
Cma12g00603 1032 PRINTS P-type cation-transporting ATPase superfamily signature 615 626 - -
Cma12g00603 1032 PRINTS P-type cation-transporting ATPase superfamily signature 203 217 - -
Cma12g00603 1032 PRINTS P-type cation-transporting ATPase superfamily signature 721 740 - -
Cma12g00603 1032 PRINTS P-type cation-transporting ATPase superfamily signature 637 647 - -
Cma12g00603 1032 PRINTS P-type cation-transporting ATPase superfamily signature 744 756 - -
Cma12g00603 1032 Gene3D - 73 267 - -
Cma12g00603 1032 MobiDBLite consensus disorder prediction 41 60 - -
Cma12g00603 1032 CDD P-type_ATPase_SERCA 5 1006 - -
Cma12g00603 1032 SMART Cation_ATPase_N_a_2 3 107 IPR004014 -
Cma12g00603 1032 Pfam haloacid dehalogenase-like hydrolase 612 735 - -
Cma12g00603 1032 SUPERFAMILY Calcium ATPase, transduction domain A 154 265 IPR008250 -
Cma12g00603 1032 Pfam Cation transporting ATPase, C-terminus 805 1004 IPR006068 -
Cma12g00603 1032 SFLD Haloacid Dehalogenase 356 773 - -
Cma12g00603 1032 Gene3D - 85 1006 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00579 Cma-Chr1:3004890 Cma12g00603 Cma-Chr12:3149699 0 dispersed
Cma12g00603 Cma-Chr12:3149699 Cma08g00318 Cma-Chr8:1808084 1.86E-92 dispersed
Cma12g00603 Cma-Chr12:3149699 Cma13g00147 Cma-Chr13:1081823 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00603 K05853 - csv:101211345 1800.79