Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00604 ATGAGCACCAAAGCGCACAATCGGAGCAAATTTATGCGATTCGTTACTCTACCCATCAGAGCTCTTGGTAAGGCCAAGGATTTGTATGTACGAAGCATCATGGATTGTGCTCCGAGAGTTAGCCATGGCTACCCATCTGGCCAAATGCCCGTCTTGCCCAAGAGTTACAGCTCGCGATCCTGCAGATCCAATGAAACCGATGATTTCAGGGAGCTTGTTAAGGCCGCTTCTGTTAGAAGTATGGACATTAAAGATGTCGACGCCGATGTTGTTTATCCACAGAGGGTGAGACAGTCCAATGGGCTGCCTAAGAGTTGCAGCGTTGGAATGGGTAGGATCGATGAAGATAGTGCTTGCGAGTTTGAAGATGGCGTGGAGGAGAAGGGTGATTTGGTTTATCCAAGGAGTAGAAGCTACGCTGTGACGAGTACAAAATCTGGGGCTTGA 447 48.55 MSTKAHNRSKFMRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRSCRSNETDDFRELVKAASVRSMDIKDVDADVVYPQRVRQSNGLPKSCSVGMGRIDEDSACEFEDGVEEKGDLVYPRSRSYAVTSTKSGA 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3177662 3178108 - CmaCh12G006040.1 Cma12g00604 305094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00604 148 PIRSF UCP031279 1 147 IPR016972 -
Cma12g00604 148 PANTHER OS07G0123800 PROTEIN 1 145 - -
Cma12g00604 148 PANTHER BNAC09G15340D PROTEIN 1 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00604 - - - csv:105434639 255.373
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00604 Cma-Chr12:3177662 Cma03g00902 Cma-Chr3:6581022 1.82E-24 wgd
Cma12g00604 Cma-Chr12:3177662 Cma07g00639 Cma-Chr7:2777424 1.29E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g625 Blo01g01491 . Bda01g00595 Bda03g00166 Bpe02g00458 . . Bma01g02243 . Cmo12g00544 . . . Car12g00548 Sed11g0916 . Cpe07g00524 Bhi04g00446 Tan02g1717 Cmetu08g1756 . Hepe08g1344 . Lcy13g2146 Cla08g01634 Cam08g2136 Cec08g1723 Cco08g1843 Clacu08g1823 . Cre08g1607 . . . . . . . Cme03g02115 . . . . . . . . . . . Cma12g00604 . . . . . . . . . . . . . . . . . . . Lsi08g01539 Csa02g01880 Chy03g01605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001340 6 1 4 4 6 2 3 2 2 2 2 2 3 2 2 2 2 3 4 2 2 2 1 3 1 2 2 1 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00604 Cma_Chr12 FPKM 28.038034 28.25602 17.088221 15.583963 5.693331 6.156322 4.625967 11.305094 12.208138 13.650076