Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00605 ATGCCGATATACCAGCCGTCTACTTGGAAAGCAGGGGATCCCAAGCTTGTAGTAGCTTGCGGAGCGCAGATTCTAGATCTGGAAACTGTCGTCAAAGATGGGATTCTCGGCGGAGGCGGCGGTGGCGGTGGCGGTGGCGGTGGGGAGAAGTTAGATCTGAAGAAGATGATTGTGGAGCTGGAATCGTCGATAGAGGTCCCATCGGTGTTCATTTGCCCAATTTCTCTCGAGCCGATGCAAGACCCGGTGACACTCTGTTCTGGGCAGACCTACGAGCGGTGCAACATTCAGAAATGGTTCTCTTTAGGCCATTTGACTTGCCCCACAACAATGCAAGAGCTTTGGGACGATTCCCTTACACCCAATCGGACCCTTCACCAGTTGATTCACACCTGGTTTTCGCAGAAGTTCTTAGCGTTCAAGAAGAAATCAGAGGACGTTCAGGGGAGAGTAACAGAGCTTTTGGATTCATTGAAGAAGGTCAAGGGTCAAGCTAGAGTTCAGTCCCTGAAAGATCTCCGACATGTTGTCGCCGCCCATTCCTCCGCCAAAAAGATGGTGGTCGACAACGGCGGCGTCGCTGTAATCTCTTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCGGAAGCCGTGGGGATTCTCGTAAATTTGGATCTCGATTCGGAGTTAAAGAACAATTTGATTCAACCCACAAGAAGATCACTAATTGCAGATATTTTAAACGAAGGCTCCATCGAAACCAAGATCAATTGCACGAAATTCATCAAGAAAATAATGGACGGTGACGATTCAAGAACAGAGAGCGTTTCAAGTTTGAGTTTACTCGTGGGATTGTTGAGAATGGTAAAGGATCAAAAACACCCAAATGGAGTAACCGCCGGACTTAGTTTACTCCGATCGTTCTGTTCAAACGAATCCATAAAAAAGCAACTGGTAAGCATCGGCGCCGTCGCGAAACTCGGCGGTGCTCTGTCCAGTTTCAACGGTGATGGGTTGGAATCAGCGCTTTACATTCTCGACGGTTTGTCGTGTCTTCCAGAGGGGAGATTAGCGTTGAAAGATTGTGAAGAAACGATTAAGATGTTGGTGAAATTATTGATGAAAGTATCTGAGATTTGTACTGAATTTGCGTTGTCAATTTTATGGGCGGTTTTCAAGGTGGCGCCGGAGGAATGCGCGGTGGTTGCGGTGGATGCAGGATTGGCGGCCAAGTTGCTGCTAGTGATACAAAGTGGGTGCAATAAAGAGGTAAAACAGAGATCATCAGAGCTATTGAAATTGTGTAGTCTAAATTACCCGGATTCCATCTTCATTTCAAAGTGTAAGCTTACAACAACTATACAATAA 1353 46.93 MPIYQPSTWKAGDPKLVVACGAQILDLETVVKDGILGGGGGGGGGGGGEKLDLKKMIVELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERCNIQKWFSLGHLTCPTTMQELWDDSLTPNRTLHQLIHTWFSQKFLAFKKKSEDVQGRVTELLDSLKKVKGQARVQSLKDLRHVVAAHSSAKKMVVDNGGVAVISSLLGSFTSHAVGSEAVGILVNLDLDSELKNNLIQPTRRSLIADILNEGSIETKINCTKFIKKIMDGDDSRTESVSSLSLLVGLLRMVKDQKHPNGVTAGLSLLRSFCSNESIKKQLVSIGAVAKLGGALSSFNGDGLESALYILDGLSCLPEGRLALKDCEETIKMLVKLLMKVSEICTEFALSILWAVFKVAPEECAVVAVDAGLAAKLLLVIQSGCNKEVKQRSSELLKLCSLNYPDSIFISKCKLTTTIQ 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3181039 3182391 + CmaCh12G006050.1 Cma12g00605 305095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00605 450 Gene3D - 138 446 IPR011989 -
Cma12g00605 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 137 IPR013083 -
Cma12g00605 450 SUPERFAMILY RING/U-box 63 136 - -
Cma12g00605 450 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Cma12g00605 450 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 38 449 - -
Cma12g00605 450 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
Cma12g00605 450 PANTHER WDSAM1 PROTEIN 38 449 IPR045185 GO:0061630
Cma12g00605 450 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Cma12g00605 450 SUPERFAMILY ARM repeat 151 436 IPR016024 -
Cma12g00605 450 CDD RING-Ubox_PUB 70 112 IPR045210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma09g00301 Cma12g00605 CCT
Cma01g01775 Cma12g00605 CCT
Cma05g00129 Cma12g00605 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00789 Cma-Chr7:3573014 Cma12g00605 Cma-Chr12:3181039 1.82E-38 dispersed
Cma12g00605 Cma-Chr12:3181039 Cma04g00485 Cma-Chr4:2469383 6.38E-41 dispersed
Cma01g01775 Cma-Chr1:11908140 Cma12g00605 Cma-Chr12:3181039 0 wgd
Cma12g00605 Cma-Chr12:3181039 Cma05g00129 Cma-Chr5:572674 0 wgd
Cma12g00605 Cma-Chr12:3181039 Cma09g00301 Cma-Chr9:1239658 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00605 - - csv:101211594 737.643