Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00612 ATGGATTTTGGAGCGGTGGGTTTTGATGGGTTGGTGGTGGGTTCATCGGACATCTCTGGTTTCTCTTCAGATCCTGAAATGAAGCAGAAATGGTACGATTCTGCCTCTGTTTCTGGGTTTTTGCACAAACAGGAGCGATCTGGCGGTGGCGGTGTAGCTGAAATGGAGGATTTGAGAGCCTCTAAGCTCCCTAAAACGTCTGCTTCTTCTTTGCTCAGATCTAATTCCCCTTTCTTTGTCTCTGATTCTAACCAAAATCATCACCAAATGCTCTGTTTTTCATCGCCTAAAGCAGAGCCTCCTCCACTTGATAAGACAGCTTCTCTCTCAGCTGCTTCCCCTAATTTCGTCCGATCCTCCGCCCCAAGAAATGCAGGCGGTAGTTATGGAGGTTTGAACGGTGGAAGCATGCACGGCGGTGGTTTTATAGGTGTTAGAACTCCGTTCACTCCATCTCAATGGATGGAGCTGGAACACCAGGCTTTGATCTACAAATACATTACTGCTAATGTCCATGTTCCTTCTAATTTGCTCATTCCCATCAGAAAAGCGCTTGAATCTGCTGGCATTCCGACATTTGCCGGCGGATTTCTCCGACCCACTGCCGTGGGGTGGGGAGCTTTCAATGTGGGGTTTTCAAATAACAGTGATCCTGAACCGGGAAGGTGCCGTCGGACCGACGGGAAGAAATGGCGGTGCTCAAGAGACGCAGTTGCTGACCAGAAGTACTGTGAACGGCATATGAACAGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAAGCCGGCCACTCCCACTCCGTTGCCGGAGCCTCCAATATTACCGCTGCTGCCACCACCACCACCGCGTCTAAACTGATTTCTTCTCCACCTTCCATGACGGCGGTACCCAGCAACGCCTCCCCCAACACCATCTCTTGTGCTGGTACTCATCACTTCAAGAACCTGAACCGCGGTGGATCTCACCCGCCTCCCTCCTCCGCCACCGCCCCTCAAATCAACAGAATGTTCATAACGAACAAAGAGAATGCCGGCGTTGGGTTGCATGATTCATCTTCCATGAACATGAAACAATTCAAACAGCTTCCATTCGCCATTCAGAAACCGAACCCTTTTGAAGAATCTCCAAGAGCAGAGTTTACGTCTGTCTCTTCCAATTTCCTCCTCAACCCTTCACAAAAGACTTCATCTTTGATGACTTACAGAGCTTTCAATCCTTCAGAGGGCCTCACTACTTCTCAACCAGCAGCTGAAACCCAACACTCACTCAATTGGCCCAAGAACCAATCCGATAGCTCATCGGTGTCGTGGTCGAACTGGAATCCCGATCTCCAATCCGATAGGACTCAGCTATCCATATCAATCCCAATGGCTACATCGGATTTCAGATCCTCGACGTCGTCTCCCGTTCACGAAAAAGTCACTCTCTCGCCGTTGAGATCTTCGCAGGAGTTCGACCCAATTCAAATGGGATTGGGAGTGGGGAATGTAATGGATGAGGCAAACAAGCAGGCAAATTGGATTCCCATCTCGTGGGAGAGCTCAATGGGTGGTCCGCTTGGAGAGGTTCTTCATAGCACGAACAACAACAGCGGGGAATTGAAGAACTCATCGATACTAAACCTGATGACTGAAGGGTGGGACAACAGTTCGTCGCTTGGGTCATCGCCCACCGGGGTTCTGCAGAAGACTGCGTTCGGGTCTTTCTCGAACAGCAGCACAGGGAGTAGCCCAAGAACAGATAACAACAACAAGACTCACGAAGGAGGAGGAGGCAGCCAATGCAGCGATCGTTTGGGGTCAACTTTTGTGAATTCTTCATCATCTTTGCCTAGTGGTTAA 1845 50.03 MDFGAVGFDGLVVGSSDISGFSSDPEMKQKWYDSASVSGFLHKQERSGGGGVAEMEDLRASKLPKTSASSLLRSNSPFFVSDSNQNHHQMLCFSSPKAEPPPLDKTASLSAASPNFVRSSAPRNAGGSYGGLNGGSMHGGGFIGVRTPFTPSQWMELEHQALIYKYITANVHVPSNLLIPIRKALESAGIPTFAGGFLRPTAVGWGAFNVGFSNNSDPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEGQAGHSHSVAGASNITAAATTTTASKLISSPPSMTAVPSNASPNTISCAGTHHFKNLNRGGSHPPPSSATAPQINRMFITNKENAGVGLHDSSSMNMKQFKQLPFAIQKPNPFEESPRAEFTSVSSNFLLNPSQKTSSLMTYRAFNPSEGLTTSQPAAETQHSLNWPKNQSDSSSVSWSNWNPDLQSDRTQLSISIPMATSDFRSSTSSPVHEKVTLSPLRSSQEFDPIQMGLGVGNVMDEANKQANWIPISWESSMGGPLGEVLHSTNNNSGELKNSSILNLMTEGWDNSSSLGSSPTGVLQKTAFGSFSNSSTGSSPRTDNNNKTHEGGGGSQCSDRLGSTFVNSSSSLPSG 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3214305 3217017 + CmaCh12G006120.1 Cma12g00612 305102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00612 614 Pfam WRC 218 260 IPR014977 -
Cma12g00612 614 SMART QLQ_2 147 183 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma12g00612 614 PANTHER GROWTH-REGULATING FACTOR 9 29 587 - -
Cma12g00612 614 MobiDBLite consensus disorder prediction 407 442 - -
Cma12g00612 614 MobiDBLite consensus disorder prediction 565 614 - -
Cma12g00612 614 MobiDBLite consensus disorder prediction 288 312 - -
Cma12g00612 614 ProSiteProfiles QLQ domain profile. 148 183 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma12g00612 614 MobiDBLite consensus disorder prediction 248 269 - -
Cma12g00612 614 Pfam QLQ 148 182 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma12g00612 614 MobiDBLite consensus disorder prediction 288 332 - -
Cma12g00612 614 PANTHER - 29 587 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cma12g00612 614 ProSiteProfiles WRC domain profile. 217 261 IPR014977 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00612 - - - csv:101202772 837.795
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00124 Cma12g00612 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00499 Cma-Chr3:4907974 Cma12g00612 Cma-Chr12:3214305 2.77E-07 dispersed
Cma12g00612 Cma-Chr12:3214305 Cma14g01236 Cma-Chr14:9788235 9.33E-41 dispersed
Cma12g00612 Cma-Chr12:3214305 Cma03g00893 Cma-Chr3:6556430 9.34E-121 wgd
Cma12g00612 Cma-Chr12:3214305 Cma05g00124 Cma-Chr5:545401 0 wgd
Cma12g00612 Cma-Chr12:3214305 Cma07g00633 Cma-Chr7:2751972 2.11E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g612 Blo01g01488 Blo12g00996 Bda01g00599 Bda03g00162 Bpe02g00463 Bpe04g00144 . . Cmo05g00128 Cmo12g00548 . . . Car12g00553 . . Cpe07g00530 Bhi04g00454 Tan02g1695 . . Hepe08g1351 . . Cla08g01639 Cam08g2143 Cec08g1730 Cco08g1850 Clacu08g1831 . Cre08g1614 Cone4ag1631 Cone7ag1319 Cone17ag0901 Cone20ag0243 . . . Cme03g02123 . Blo18g00727 . Bda01g01584 Bpe02g01773 . Bma01g00682 . . . . Cma12g00612 Cma05g00124 Car05g00106 . Cpe11g00107 . . . . . . . . . . . . . . . Lsi08g01545 Csa02g01873 Chy03g01613 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001015 3 4 5 4 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 2 3 1 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36002 PF08879 WRC 3.40E-21 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00612 Cma_Chr12 FPKM 8.057106 7.481326 3.721603 3.893044 25.865307 24.236305 25.781687 2.512375 2.941013 2.600094