Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00614 | ATGAACAACAAGAACAAGATCAAGAACATGAACATGAAGTCGATGAATGACCATAACAATGGCTGGTTGGGCTTCTATGGGATACCCGACTCTGCTGCTGCTGGTGCTGCTGCTATGCACCTCAAATCTGACGCCTCTCTCTGTCTCATGGGGCCTCTTTCAACATCCCAAAATCAAGGGATGGTGCCGAATTCATCACCGAAGCTCGAGGACTTTCTCGGCGGTGCAACAATGGCGGACAGGGAACATTCATTGGACCTTCAAAATCAAGAACATCACCACATTTTGATTCAAAATTCCCATCCCTACTACTCTGCTTTGGTTCCTTCCGACCCACAAATTCTTCCAATCGACGAAAACGAAATCCGTTCCCTTAGAAACTGGGTCTCTCCTCCCTACTACGCCGCCACTCCCCATAATACTCTGGAGCAGCATATTACCGGCGGTAGCGGTGGCGGTGGTTCTGCCTCCATTGCCGGAATGAGCTGCGGGGAACTTCAGTCATTGAGCTTATCCATGAGTCCAGGTTCTGAATCAACCACGCTCACTGCTCCCGGTCAGATCTCTTCCACCGCCGCCGTGGAAACAAAGAAACGAGGCCCTGGGAAACTCTGCCACAAACAACCCCTTCACCGCAAATCCATTGATACTTTTGGCCAACGAACCTCCCAATATCGCGGAGTTACAAGACATAGATGGACAGGGAGATATGAAGCTCATCTATGGGATAATAGCTGCAAGAAAGAAGGGCAAACAAGGAAAGGAAGACAAGTTTATCTGGGAGGATATGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCTTGCCGCTCTCAAATATTGGGGACCCTCCACTCATATAAATTTTCCACTGGAGAATTATCAAACTGAGCTGGAAGAGATGAAGAACATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGCTTTTCGAGGGGCGCTTCGGTGTTCCGTGGAGTCACAAGACATCACCAACATGGAAGATGGCAGGCCAGGATTGGGCGAGTTGCTGGAAATAAAGATCTTTATCTTGGAACATTTAGCACGCAAGAGAAAGCCGCTGAGGCATATGACATAGCAGCAATCAAATTCCGCGGCTTAAATGCAGTCACCAACTTTGACATTTGTAGGTATGATGTCGAGAGAATCATGTCTAGTAGTACTCTACTGACAGGCGAGCTAGCTCGAAGAAACAAGAAAGTAGACACAACCGTTGCGCCAAACAACAACAGCAGGATTGCAGTCGAGATCGAAAACAACGCCACCAATTCAAATAGTACCAATTGGAAGACAGCATTGTATCACAATCAGCAGCAACAGTCCATGGCTGCATTGGGAGGCAATCGAAACGCATCGTTTACAATGGCATTACAAGACTTGATCGGAATTGAATCGTTAAACTCAGCGAGTCAATTTTCAAATGCATCGTCATTGGTAACAAGTTTAAGTAGTAGCTCAAGAGAAGGCAGCCCGGAGAAGACAAAGCTGGCAACAGTAAATGGTGTCAGCTCGTGGTACCCATGGCCAGCAGCGATATCCATGGCACATTTACCTGTTTTTGCAGCTTGGAACGACACTTGA | 1611 | 47.3 | MNNKNKIKNMNMKSMNDHNNGWLGFYGIPDSAAAGAAAMHLKSDASLCLMGPLSTSQNQGMVPNSSPKLEDFLGGATMADREHSLDLQNQEHHHILIQNSHPYYSALVPSDPQILPIDENEIRSLRNWVSPPYYAATPHNTLEQHITGGSGGGGSASIAGMSCGELQSLSLSMSPGSESTTLTAPGQISSTAAVETKKRGPGKLCHKQPLHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEKAAEAYDIAAIKFRGLNAVTNFDICRYDVERIMSSSTLLTGELARRNKKVDTTVAPNNNSRIAVEIENNATNSNSTNWKTALYHNQQQQSMAALGGNRNASFTMALQDLIGIESLNSASQFSNASSLVTSLSSSSREGSPEKTKLATVNGVSSWYPWPAAISMAHLPVFAAWNDT | 536 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3226740 | 3230088 | + | CmaCh12G006140.1 | Cma12g00614 | 305104 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00614 | 536 | SUPERFAMILY | DNA-binding domain | 223 | 292 | IPR016177 | GO:0003677 | |
Cma12g00614 | 536 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 26 | 83 | - | - | |
Cma12g00614 | 536 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 110 | 534 | - | - | |
Cma12g00614 | 536 | SMART | rav1_2 | 326 | 390 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00614 | 536 | SMART | rav1_2 | 224 | 296 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00614 | 536 | ProSiteProfiles | AP2/ERF domain profile. | 224 | 290 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00614 | 536 | Gene3D | AP2/ERF domain | 326 | 386 | IPR036955 | GO:0003700|GO:0006355 | |
Cma12g00614 | 536 | Gene3D | AP2/ERF domain | 223 | 292 | IPR036955 | GO:0003700|GO:0006355 | |
Cma12g00614 | 536 | ProSiteProfiles | AP2/ERF domain profile. | 326 | 384 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00614 | 536 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT | 110 | 534 | - | - | |
Cma12g00614 | 536 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT | 26 | 83 | - | - | |
Cma12g00614 | 536 | Pfam | AP2 domain | 325 | 376 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00614 | 536 | Pfam | AP2 domain | 224 | 282 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00614 | 536 | SUPERFAMILY | DNA-binding domain | 325 | 384 | IPR016177 | GO:0003677 | |
Cma12g00614 | 536 | PRINTS | Ethylene responsive element binding protein signature | 225 | 236 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00614 | 536 | PRINTS | Ethylene responsive element binding protein signature | 366 | 386 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00614 | 536 | CDD | AP2 | 223 | 290 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00614 | 536 | CDD | AP2 | 325 | 385 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma09g00308 | Cma12g00614 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g00614 | Cma-Chr12:3226740 | Cma12g00994 | Cma-Chr12:7929517 | 3.27E-112 | dispersed | |
Cma01g00037 | Cma-Chr1:141200 | Cma12g00614 | Cma-Chr12:3226740 | 1.72E-134 | transposed | |
Cma01g01756 | Cma-Chr1:11818737 | Cma12g00614 | Cma-Chr12:3226740 | 6.80E-156 | wgd | |
Cma12g00614 | Cma-Chr12:3226740 | Cma03g00890 | Cma-Chr3:6544296 | 1.22E-177 | wgd | |
Cma12g00614 | Cma-Chr12:3226740 | Cma05g00122 | Cma-Chr5:533391 | 0 | wgd | |
Cma12g00614 | Cma-Chr12:3226740 | Cma07g00631 | Cma-Chr7:2740186 | 0 | wgd | |
Cma12g00614 | Cma-Chr12:3226740 | Cma09g00308 | Cma-Chr9:1272511 | 8.38E-172 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36003 | PF00847 | AP2 | 1.10E-13 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00614 | K09285 | - | csv:101212797 | 681.019 |