Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00614 ATGAACAACAAGAACAAGATCAAGAACATGAACATGAAGTCGATGAATGACCATAACAATGGCTGGTTGGGCTTCTATGGGATACCCGACTCTGCTGCTGCTGGTGCTGCTGCTATGCACCTCAAATCTGACGCCTCTCTCTGTCTCATGGGGCCTCTTTCAACATCCCAAAATCAAGGGATGGTGCCGAATTCATCACCGAAGCTCGAGGACTTTCTCGGCGGTGCAACAATGGCGGACAGGGAACATTCATTGGACCTTCAAAATCAAGAACATCACCACATTTTGATTCAAAATTCCCATCCCTACTACTCTGCTTTGGTTCCTTCCGACCCACAAATTCTTCCAATCGACGAAAACGAAATCCGTTCCCTTAGAAACTGGGTCTCTCCTCCCTACTACGCCGCCACTCCCCATAATACTCTGGAGCAGCATATTACCGGCGGTAGCGGTGGCGGTGGTTCTGCCTCCATTGCCGGAATGAGCTGCGGGGAACTTCAGTCATTGAGCTTATCCATGAGTCCAGGTTCTGAATCAACCACGCTCACTGCTCCCGGTCAGATCTCTTCCACCGCCGCCGTGGAAACAAAGAAACGAGGCCCTGGGAAACTCTGCCACAAACAACCCCTTCACCGCAAATCCATTGATACTTTTGGCCAACGAACCTCCCAATATCGCGGAGTTACAAGACATAGATGGACAGGGAGATATGAAGCTCATCTATGGGATAATAGCTGCAAGAAAGAAGGGCAAACAAGGAAAGGAAGACAAGTTTATCTGGGAGGATATGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCTTGCCGCTCTCAAATATTGGGGACCCTCCACTCATATAAATTTTCCACTGGAGAATTATCAAACTGAGCTGGAAGAGATGAAGAACATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGCTTTTCGAGGGGCGCTTCGGTGTTCCGTGGAGTCACAAGACATCACCAACATGGAAGATGGCAGGCCAGGATTGGGCGAGTTGCTGGAAATAAAGATCTTTATCTTGGAACATTTAGCACGCAAGAGAAAGCCGCTGAGGCATATGACATAGCAGCAATCAAATTCCGCGGCTTAAATGCAGTCACCAACTTTGACATTTGTAGGTATGATGTCGAGAGAATCATGTCTAGTAGTACTCTACTGACAGGCGAGCTAGCTCGAAGAAACAAGAAAGTAGACACAACCGTTGCGCCAAACAACAACAGCAGGATTGCAGTCGAGATCGAAAACAACGCCACCAATTCAAATAGTACCAATTGGAAGACAGCATTGTATCACAATCAGCAGCAACAGTCCATGGCTGCATTGGGAGGCAATCGAAACGCATCGTTTACAATGGCATTACAAGACTTGATCGGAATTGAATCGTTAAACTCAGCGAGTCAATTTTCAAATGCATCGTCATTGGTAACAAGTTTAAGTAGTAGCTCAAGAGAAGGCAGCCCGGAGAAGACAAAGCTGGCAACAGTAAATGGTGTCAGCTCGTGGTACCCATGGCCAGCAGCGATATCCATGGCACATTTACCTGTTTTTGCAGCTTGGAACGACACTTGA 1611 47.3 MNNKNKIKNMNMKSMNDHNNGWLGFYGIPDSAAAGAAAMHLKSDASLCLMGPLSTSQNQGMVPNSSPKLEDFLGGATMADREHSLDLQNQEHHHILIQNSHPYYSALVPSDPQILPIDENEIRSLRNWVSPPYYAATPHNTLEQHITGGSGGGGSASIAGMSCGELQSLSLSMSPGSESTTLTAPGQISSTAAVETKKRGPGKLCHKQPLHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEKAAEAYDIAAIKFRGLNAVTNFDICRYDVERIMSSSTLLTGELARRNKKVDTTVAPNNNSRIAVEIENNATNSNSTNWKTALYHNQQQQSMAALGGNRNASFTMALQDLIGIESLNSASQFSNASSLVTSLSSSSREGSPEKTKLATVNGVSSWYPWPAAISMAHLPVFAAWNDT 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3226740 3230088 + CmaCh12G006140.1 Cma12g00614 305104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00614 536 SUPERFAMILY DNA-binding domain 223 292 IPR016177 GO:0003677
Cma12g00614 536 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 26 83 - -
Cma12g00614 536 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 110 534 - -
Cma12g00614 536 SMART rav1_2 326 390 IPR001471 GO:0003700|GO:0006355
Cma12g00614 536 SMART rav1_2 224 296 IPR001471 GO:0003700|GO:0006355
Cma12g00614 536 ProSiteProfiles AP2/ERF domain profile. 224 290 IPR001471 GO:0003700|GO:0006355
Cma12g00614 536 Gene3D AP2/ERF domain 326 386 IPR036955 GO:0003700|GO:0006355
Cma12g00614 536 Gene3D AP2/ERF domain 223 292 IPR036955 GO:0003700|GO:0006355
Cma12g00614 536 ProSiteProfiles AP2/ERF domain profile. 326 384 IPR001471 GO:0003700|GO:0006355
Cma12g00614 536 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 110 534 - -
Cma12g00614 536 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 26 83 - -
Cma12g00614 536 Pfam AP2 domain 325 376 IPR001471 GO:0003700|GO:0006355
Cma12g00614 536 Pfam AP2 domain 224 282 IPR001471 GO:0003700|GO:0006355
Cma12g00614 536 SUPERFAMILY DNA-binding domain 325 384 IPR016177 GO:0003677
Cma12g00614 536 PRINTS Ethylene responsive element binding protein signature 225 236 IPR001471 GO:0003700|GO:0006355
Cma12g00614 536 PRINTS Ethylene responsive element binding protein signature 366 386 IPR001471 GO:0003700|GO:0006355
Cma12g00614 536 CDD AP2 223 290 IPR001471 GO:0003700|GO:0006355
Cma12g00614 536 CDD AP2 325 385 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma09g00308 Cma12g00614 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00614 Cma-Chr12:3226740 Cma12g00994 Cma-Chr12:7929517 3.27E-112 dispersed
Cma01g00037 Cma-Chr1:141200 Cma12g00614 Cma-Chr12:3226740 1.72E-134 transposed
Cma01g01756 Cma-Chr1:11818737 Cma12g00614 Cma-Chr12:3226740 6.80E-156 wgd
Cma12g00614 Cma-Chr12:3226740 Cma03g00890 Cma-Chr3:6544296 1.22E-177 wgd
Cma12g00614 Cma-Chr12:3226740 Cma05g00122 Cma-Chr5:533391 0 wgd
Cma12g00614 Cma-Chr12:3226740 Cma07g00631 Cma-Chr7:2740186 0 wgd
Cma12g00614 Cma-Chr12:3226740 Cma09g00308 Cma-Chr9:1272511 8.38E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36003 PF00847 AP2 1.10E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00614 K09285 - csv:101212797 681.019