Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00619 ATGGAATTTTCTGCGCTTCTAACTTCAGTTGGTATCAATATTGGCATCTGTGTGGTGCTTTTCTCTCTGTATTCAATATTGCGAAAGCAACCGAGCAACATAACGGTGTATTTCGGTCGAAAGATTGCATCGAGAAAGTTGAAACACTGTGAAACCTTTTGCTTTGATAGATTTGTACCTTCCCCTAGTTGGATAGTGAAAGCTTGGGAAACAACTGAGGAAGAAATTTTGGCTCTCGATGGCTTAGATTCTGTGGTTTTTCTCAGGATAATAATATTCAGCATTCGGGTTTTTTCAATTGCTGCCATCACTTGCCTGTTTCTAGTGCTTCCAGTAAATTATTACGGTCAAGAAACGACTCACAAGCTGATACCTTCCGAGTCGCTCGATGTTTTTTCCATTGAGAACATCAAGGAAAATTCTAAGTGGCTTTGTGCCCATTGTATCGCTTTATACGTCATATGTTGTTCGGCTTGTGTGCTCCTTTACTTTGAGTACTTAAGCATAAGTCAAATGAGACTTATCTACATCACTGGTGCTCAAATGAATCCTACTTATTTTACGGTTTTAGTCCGGTCGATTCCGTGGTCTCCAGACGAATCTTATAGTGAAACTGTTAGGAAGTTCTTCACCAATTACCATGAATCCGGTTACTTGTCGCACCAAATGATATATCGGTCGGGTACCGTTCAGAAACTGTTGAGTGATGCAGAGAAAATGTACAACATGATGAAGGAAAATTCGGTGGAAATGCACTGTCAGAAGTTCAAAGGAGGATGTTTTTGTGCAGGACCAACAAATTCTTTTGCGATTCTTCCAAGTGTAAATGATAGTGTGACAGATAAGAACCTATATGGTGATATGGACATGTTGGCTGGAGAAAAGGAATGTTCAGCTGCTTTTGTATTCTTCAAGACTCGGTATGCTGCGCTTATGGCTGCGACCGCTCTTCAGTCAGCAAATCCTATGTCGTGGGCAACAGACTTAGCTCCAGCACCTCATGATGTTTATTGGTCAAACCTTTCTATACCATATCGGCAACTTTGGATTCGAAAGATAGGAACACTGGTTGCTGCTACCGCATTCATGCTTGTGTTTTTGCTTCCTGTAACGCTCGTACAAAGCATGACGCAGCTGGAACAATTGCAGCAAGCATTCCCATTCCTTAAAGGCCTCTTGAAAAAGAAATATATGAGCGAACTGGTGACCGGATACTTACCGAGCGTCATATTGATTCTATTTATGTATCTGGTTCCACCGACAATGATGTCGTTTTCAGCCCTGGAGGGATCTATTTCTCGCAGTGGTCGGAAACGGAGTGCATGCCTTAAAGTCTTGTACTTCACGATCTGGAACGTCTTTTTCGTTAACGTATTTACGGGGTCGATTCTTCGTACGTTGAATGTCTTTTTTAGTGTAAAGGATATACCTGCTACATTTGGCAAAGCGGTACCGGCACAGGCTAGTTTCTTCTTGACTTATGTTCTATCATCTGGTTGGGCAAGTTTGTCTTGTGAAGTTATGCAACTTTTTCCTCTTACTTGCAACTTGATCAGAAGATGGATTCTTAGAATCAAGAGCGAACCACTTTTCGAAACTCTTTCGTTCCCATATCACACGGAAGTTCCTCGAATTCTCCTGTTCGGTTTCCTCGGCTTTACGTGTTGCATCTTGGCTCCTTTGATCACTCCCTTCTTGCTGTTTTACTTTTTTCTTGCCTACCTCGTTTACAAAAACCAGATTCTCAACGTGTACGTATCGAAATACGAAAGCGGAGGACAATTTTGGCCTATAGCTCACAACACAACCATCTTTGCTATGGTAGTAGCTCAAATAATTGCTCTGGGAGTGTTTGGTCTAAAAGAATCTCCAGTTGCATCAGGTTTCACAATCCCATTAATCATCGGCACGCTCCTATTTCACGAGTATTGCAGGCAGCGATTTGGGCCAATATTCAAAAACACAGCTGCAGAGGTGCTCATTGAGATGGACAGAAAAGATGAACAATGTGGTAGGCTGGAAGAGATGTATAAAAAGTTGCGCACGGCGTATTGCCAGTTCACACTGTTGGCTAAACGAGACACGAGTACGTCAGGATGTTCGAGTAATCACAACAACGAAAACAGCATTATCGACACTGAAAGTGCAAAACCAGGGAAGCCATTGGAAGTACATGGTTTGTGGAATCCTCCTTTCCATTTAGATGATATGGGTGATTTGGGCGTACCAACACTCACCAATAAATAA 2247 42.1 MEFSALLTSVGINIGICVVLFSLYSILRKQPSNITVYFGRKIASRKLKHCETFCFDRFVPSPSWIVKAWETTEEEILALDGLDSVVFLRIIIFSIRVFSIAAITCLFLVLPVNYYGQETTHKLIPSESLDVFSIENIKENSKWLCAHCIALYVICCSACVLLYFEYLSISQMRLIYITGAQMNPTYFTVLVRSIPWSPDESYSETVRKFFTNYHESGYLSHQMIYRSGTVQKLLSDAEKMYNMMKENSVEMHCQKFKGGCFCAGPTNSFAILPSVNDSVTDKNLYGDMDMLAGEKECSAAFVFFKTRYAALMAATALQSANPMSWATDLAPAPHDVYWSNLSIPYRQLWIRKIGTLVAATAFMLVFLLPVTLVQSMTQLEQLQQAFPFLKGLLKKKYMSELVTGYLPSVILILFMYLVPPTMMSFSALEGSISRSGRKRSACLKVLYFTIWNVFFVNVFTGSILRTLNVFFSVKDIPATFGKAVPAQASFFLTYVLSSGWASLSCEVMQLFPLTCNLIRRWILRIKSEPLFETLSFPYHTEVPRILLFGFLGFTCCILAPLITPFLLFYFFLAYLVYKNQILNVYVSKYESGGQFWPIAHNTTIFAMVVAQIIALGVFGLKESPVASGFTIPLIIGTLLFHEYCRQRFGPIFKNTAAEVLIEMDRKDEQCGRLEEMYKKLRTAYCQFTLLAKRDTSTSGCSSNHNNENSIIDTESAKPGKPLEVHGLWNPPFHLDDMGDLGVPTLTNK 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3256714 3260788 + CmaCh12G006190.1 Cma12g00619 305109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00619 748 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 3 706 IPR045122 GO:0005227
Cma12g00619 748 PANTHER CSC1-LIKE PROTEIN RXW8 3 706 - -
Cma12g00619 748 Pfam Cytosolic domain of 10TM putative phosphate transporter 187 340 IPR027815 -
Cma12g00619 748 Pfam Late exocytosis, associated with Golgi transport 6 165 IPR032880 -
Cma12g00619 748 Coils Coil 663 683 - -
Cma12g00619 748 Pfam Calcium-dependent channel, 7TM region, putative phosphate 351 618 IPR003864 GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00619 K21989 TMEM63, CSC1; calcium permeable stress-gated cation channel - csv:101213759 1259.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01679 Cma-Chr4:8450097 Cma12g00619 Cma-Chr12:3256714 0 dispersed
Cma12g00619 Cma-Chr12:3256714 Cma18g00876 Cma-Chr18:7584330 8.58E-127 dispersed
Cma20g00596 Cma-Chr20:2801882 Cma12g00619 Cma-Chr12:3256714 1.03E-62 dispersed
Cma12g00619 Cma-Chr12:3256714 Cma02g00182 Cma-Chr2:840318 1.53E-123 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g597 . . Bda01g00805 . . . . . . Cmo12g00556 . . . . Sed11g0906 . Cpe07g00536 Bhi04g00469 Tan02g1680 Cmetu03g1782 . Hepe08g1363 . Lcy13g2161 Cla08g01647 Cam08g2150 Cec08g1739 Cco08g1857 Clacu08g1838 . Cre08g1622 Cone4ag1639 . Cone17ag0908 Cone20ag0252 . . . Cme03g02131 . . . . . . . . . . . Cma12g00619 . . . . . . . . . . . . Cla05g02118 Cam05g2272 Cec05g2293 Cco05g2334 Clacu05g2269 Cmu05g2132 Cre05g2255 Lsi08g01555 Csa02g01864 Chy03g01622 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003386 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 3 1 1 1 1 6 8 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00619 Cma_Chr12 FPKM 9.036281 10.93438 16.206539 17.744761 3.307001 3.730704 3.788133 25.493462 25.568554 28.066984