Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma12g00620 | ATGGGGAGAGCTCCTTGCTGTGACAAAGCCAGTGTCAAGAAAGGCCCATGGTCGACTGAAGAAGACACCAAGCTCAAGTCTTACATTGAGCAACATGGAACTGGTGGGAACTGGATTGCTTTGCCTCAAAAAATTGGCCTAAAGAGATGTGGAAAAAGTTGTCGATTGAGATGGCTAAATTATCTCCGTCCGAACATCAAGCATGGAGGTTTCTCCGAAGAAGAAGATAGAATCATTTGTAGTCTCTATCTTAGCATTGGAAGCAGGTGGTCTATAATTGCAGCACAGTTACCAGGAAGAACGGATAACGACATAAAGAACTACTGGAACACGAGGTTGAAGAAGAAGCTATTTGGGAAGCAAAGGAAAGAGCAGCAACAACAACAACAGGCATCTCGTCGAGGAAACGCCCTAAGGCATCACGGGACGGTGAATAAAAGCAATAGCACCATTCCTTATTGGCCTCAGCAGCAGCAGCAGCTCCCAGTGGCACCAAGCTACTATAACAACAACAACAACATGGCATCATCTGACCATATCAACCCAATTGAGAAATTGAGCAAATTTGGAGCTCAATTTATGGACGAAAGTGTGTACAACAACAATGCAAATGGGTATGGAAATGCGTATTATTTTCCATTGCTTCAAGGGCAAAGCAGCACCCAAATGGTGGATCTTGAGAATTATGACATGGGGTTTGATGATCCAAGAAGGGTTTTGTGTGGATTTGAGTTTGTGTATGGAGATCATCATAATCAGATAATGGGTACTAGTAATAGCCATGGCTATGAAATGGGGCCTCTTATTTCTTCTTGCCCTTCAAATTACGAAGCAATGCTGCAAGATTTGTCAACCACGACTCAAGAATATGATACTCACTTGAAGATATTGGATAGCAATGCAGTATGA | 909 | 42.79 | MGRAPCCDKASVKKGPWSTEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIICSLYLSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLFGKQRKEQQQQQQASRRGNALRHHGTVNKSNSTIPYWPQQQQQLPVAPSYYNNNNNMASSDHINPIEKLSKFGAQFMDESVYNNNANGYGNAYYFPLLQGQSSTQMVDLENYDMGFDDPRRVLCGFEFVYGDHHNQIMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTTTQEYDTHLKILDSNAV | 302 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3265537 | 3266716 | - | CmaCh12G006200.1 | Cma12g00620 | 305110 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma12g00620 | 302 | ProSiteProfiles | Myb-like domain profile. | 9 | 62 | IPR001005 | - | |
| Cma12g00620 | 302 | SMART | sant | 13 | 64 | IPR001005 | - | |
| Cma12g00620 | 302 | SMART | sant | 67 | 115 | IPR001005 | - | |
| Cma12g00620 | 302 | CDD | SANT | 71 | 113 | IPR001005 | - | |
| Cma12g00620 | 302 | PANTHER | OS09G0431300 PROTEIN | 1 | 189 | - | - | |
| Cma12g00620 | 302 | SUPERFAMILY | Homeodomain-like | 11 | 109 | IPR009057 | - | |
| Cma12g00620 | 302 | MobiDBLite | consensus disorder prediction | 123 | 151 | - | - | |
| Cma12g00620 | 302 | CDD | SANT | 16 | 62 | IPR001005 | - | |
| Cma12g00620 | 302 | Pfam | Myb-like DNA-binding domain | 14 | 62 | IPR001005 | - | |
| Cma12g00620 | 302 | Pfam | Myb-like DNA-binding domain | 69 | 111 | IPR001005 | - | |
| Cma12g00620 | 302 | ProSiteProfiles | Myb-like domain profile. | 63 | 113 | IPR001005 | - | |
| Cma12g00620 | 302 | Gene3D | - | 7 | 68 | - | - | |
| Cma12g00620 | 302 | PANTHER | OS09G0431300 PROTEIN | 1 | 189 | - | - | |
| Cma12g00620 | 302 | Gene3D | - | 70 | 141 | - | - | |
| Cma12g00620 | 302 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 63 | 117 | IPR017930 | - | |
| Cma12g00620 | 302 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 62 | IPR017930 | - | |
| Cma12g00620 | 302 | MobiDBLite | consensus disorder prediction | 119 | 151 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma09g00320 | Cma12g00620 | CCT | |
| Cma01g01763 | Cma12g00620 | CCT | |
| Cma01g01763 | Cma12g00620 | ECH | |
| Cma05g00116 | Cma12g00620 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma11g00412 | Cma-Chr11:2020267 | Cma12g00620 | Cma-Chr12:3265537 | 7.03E-81 | dispersed | |
| Cma12g00620 | Cma-Chr12:3265537 | Cma12g01006 | Cma-Chr12:8035974 | 8.87E-77 | dispersed | |
| Cma01g01763 | Cma-Chr1:11853801 | Cma12g00620 | Cma-Chr12:3265537 | 6.27E-84 | wgd | |
| Cma12g00620 | Cma-Chr12:3265537 | Cma03g00883 | Cma-Chr3:6503496 | 9.91E-84 | wgd | |
| Cma12g00620 | Cma-Chr12:3265537 | Cma05g00116 | Cma-Chr5:503339 | 9.43E-147 | wgd | |
| Cma12g00620 | Cma-Chr12:3265537 | Cma07g00624 | Cma-Chr7:2704789 | 8.84E-83 | wgd | |
| Cma12g00620 | Cma-Chr12:3265537 | Cma09g00320 | Cma-Chr9:1313985 | 1.22E-83 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36004 | PF00249 | Myb_DNA-binding | 4.40E-14 | CL0123 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma12g00620 | K09422 | - | csv:101203486 | 361.303 |