Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00621 ATGACGCAGAAAACGTCTTGTCCAGCACCTAAGTCGCCGGAGACATGGCCGTCGCCGTCGCCGTCGTCCTTGTCTCTCTCTAGCTACCCCATATACAACCCTAATTTTCATTATCATCATCAACAACAACACCAACAAGTTCATGATTTTCAAATAAGTAGCGGTGGGAGTAAGGATACTGATATCATGAAGGCCAAAATCATCTCCCACTCTCAATTCTCTAATCTCCTCCAAGCTTTCTTGGATTGCAAAAAGGTGGGAGCTCCGCCGGAGGTGGCGGCGGAACTTGGGTCGGTAGGGGAGGAGTTTGAGGAGCGGCGGCGGTGTTCAATGGCGGCGAGTGGGGGTTATAGTGATCCAGAACTTGATCAGTTCATGGAAGGTTACTATAGGATGTTGGTGAAGTATAGAGAGGAGCTGACAAAGCCTATTCAAGAAGCTGCTGATTTCATGCTGAGAATTGAATCTCAGCTCAATACTCTCTGTAATGGCTCCTTCCAAATCTTAGCTTCTGATGCAGCGACCGAAGAAAATCGCGACGGAATGGGATCATCGGAGGAGGAGCAAGAGAAGGGGGGCGGGGAAGCCGAAAGAGATGCAACGGAACAGATTGACCCACGAGCAGACGAGCGAGAGCTAAAGAATCACTTACTAAAGAAGTACAGTGGGTATCTGAGCACTCTAAAGCAAGAGCTTTCAAAGAAGAAGAAGAAAGGAAAGCTCCCAAAAGACGCAAGGCAGGAGCTGCTCAGATGGTGGGAAGTGCACAGCAAATGGCCATACCCATCGGAGGCAGAGAAGTTGGCGCTAGCGGAATCAACTGGGTTGGATCAGAAACAGATAAATAATTGGTTCATAAACCAGAGGAAAAGGCATTGGAAGCCGTCTGAGGATGTACAGTTGATGGGTATGGAGGGGTTTTACCATCCCAACACTGCTGCTGCTTTTTACTTCGATGGGCGTTACATGGGCGATGCCCATTACCGACAGACAATTTTGGGAGTGTACGAGCTTGGAGGCGGCTGCCATGGCGATGCGTCTAGGGCTGTATCTTCCATGCCGGAACCTTGCCGGTCATCGCCTTTCAGCGATGATGAGAGCCGTGATATTGATTGGGATAGCCTTGGATTTGGGCTGTTGCCAACAGATTACATGTATGTTATGAAATGCTCTGAAGATGAGAATTTCGAACGAGGTCAGCTGAGTCGTTATGGGAACATTGAGTTAAGCCCTGCTGCTGGGGTTCTAAATTATGGCCAGGGATTGTTTGAAGGTCTGAAAGCATATAGGAAAGAAGATGGAGGCCTTCTTCTCTTTCGTCCGCACGATAATGCTCTTCGTATGAGGACCGGTGCCGAACGAATGTGTATGCCGTCGCCCTCTGTCGAACAATTTGTTGATGCTGTGAAGCAAACTGCCATTGCTAACCGGCGTTGGGTCCCTCCGTCCGGGAAAGGATCATTATACCTGAGGCCCTTGCTCGTCGGAACTGGTCCCGTTCTCGGCTTGGCTCCGGCACCTGAATATACTTTTCTTGTTTATGCTTCCCCTGTTCGCAACTATTTCAAGGAAGATTCAGGAGCCTTGAACCTATACGTCGAGACCAAGTTCGATCGTGCATCTCGTGGTGGAACTGGAGGTGTGAAAACCATCTCAAATTATGCTCCAGCTTTAAAAGCTATCACCAGAGCCAAAAGTAGAGGCTTTTCTGATGTCTTATATCTTGATTCAGTGAATAAGAGAACTCTGGAGGAAGTTTCTTCTTGCAACATTTTTCTTGTCAAGGGAAATGTTATATCAACTCCTGCTACAAGTGGAACGATTCTTCCAGGAGTAACCCGGAAAAGCGTCATCGATATAGCCCGTAATCGCGGTTACGAGGTTGAGGAACGGGCTATCGACATGGATGAACTGTCCGACGCTCGTGAAGTTTTCTGCACGGGAACTGCTGTCGGTGTGGCCCCTGTTGGCAGCATCACTTGTCTGGATAAAAGGATTGAGTACCAAACAGGTGCTGGGACAACATGTCAGGAACTATACTCAACTCTTGTTGGGATTCAAACTGGAACCACCGAGGATAAGATTGGCTGGACTGTTGAGATCTCTTAA 2109 48.36 MTQKTSCPAPKSPETWPSPSPSSLSLSSYPIYNPNFHYHHQQQHQQVHDFQISSGGSKDTDIMKAKIISHSQFSNLLQAFLDCKKVGAPPEVAAELGSVGEEFEERRRCSMAASGGYSDPELDQFMEGYYRMLVKYREELTKPIQEAADFMLRIESQLNTLCNGSFQILASDAATEENRDGMGSSEEEQEKGGGEAERDATEQIDPRADERELKNHLLKKYSGYLSTLKQELSKKKKKGKLPKDARQELLRWWEVHSKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQLMGMEGFYHPNTAAAFYFDGRYMGDAHYRQTILGVYELGGGCHGDASRAVSSMPEPCRSSPFSDDESRDIDWDSLGFGLLPTDYMYVMKCSEDENFERGQLSRYGNIELSPAAGVLNYGQGLFEGLKAYRKEDGGLLLFRPHDNALRMRTGAERMCMPSPSVEQFVDAVKQTAIANRRWVPPSGKGSLYLRPLLVGTGPVLGLAPAPEYTFLVYASPVRNYFKEDSGALNLYVETKFDRASRGGTGGVKTISNYAPALKAITRAKSRGFSDVLYLDSVNKRTLEEVSSCNIFLVKGNVISTPATSGTILPGVTRKSVIDIARNRGYEVEERAIDMDELSDAREVFCTGTAVGVAPVGSITCLDKRIEYQTGAGTTCQELYSTLVGIQTGTTEDKIGWTVEIS 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3272455 3285625 - CmaCh12G006210.1 Cma12g00621 305111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00621 702 ProSiteProfiles 'Homeobox' domain profile. 232 295 IPR001356 GO:0003677
Cma12g00621 702 SMART KNOX1_2 61 105 IPR005540 GO:0003677|GO:0005634
Cma12g00621 702 Pfam ELK domain 212 233 IPR005539 GO:0003677
Cma12g00621 702 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 362 698 IPR036038 GO:0003824
Cma12g00621 702 SMART KNOX2_2 112 163 IPR005541 GO:0003677|GO:0005634
Cma12g00621 702 ProSitePatterns 'Homeobox' domain signature. 270 293 IPR017970 GO:0000981|GO:0006355
Cma12g00621 702 SMART ELK_2 212 233 IPR005539 GO:0003677
Cma12g00621 702 SMART ELK_2 121 141 IPR005539 GO:0003677
Cma12g00621 702 Gene3D - 351 531 IPR043131 -
Cma12g00621 702 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 343 701 - -
Cma12g00621 702 ProSitePatterns Aminotransferases class-IV signature. 585 614 IPR018300 GO:0003824
Cma12g00621 702 Pfam KNOX1 domain 63 104 IPR005540 GO:0003677|GO:0005634
Cma12g00621 702 SMART HOX_1 234 299 IPR001356 GO:0003677
Cma12g00621 702 SUPERFAMILY Homeodomain-like 233 304 IPR009057 -
Cma12g00621 702 Gene3D - 229 302 - -
Cma12g00621 702 MobiDBLite consensus disorder prediction 179 211 - -
Cma12g00621 702 Gene3D - 532 701 IPR043132 -
Cma12g00621 702 ProSiteProfiles ELK domain profile. 212 232 IPR005539 GO:0003677
Cma12g00621 702 Pfam KNOX2 domain 118 162 IPR005541 GO:0003677|GO:0005634
Cma12g00621 702 MobiDBLite consensus disorder prediction 1 25 - -
Cma12g00621 702 Pfam Homeobox KN domain 252 291 IPR008422 GO:0003677|GO:0006355
Cma12g00621 702 MobiDBLite consensus disorder prediction 175 211 - -
Cma12g00621 702 CDD homeodomain 244 296 IPR001356 GO:0003677
Cma12g00621 702 PANTHER AMINO ACID AMINOTRANSFERASE 343 701 IPR005786 GO:0004084|GO:0009081
Cma12g00621 702 Pfam Amino-transferase class IV 421 659 IPR001544 GO:0003824
Cma12g00621 702 TIGRFAM ilvE_II: branched-chain amino acid aminotransferase 397 701 IPR005786 GO:0004084|GO:0009081
Cma12g00621 702 CDD BCAT_beta_family 408 689 IPR033939 GO:0004084|GO:0009081
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00026 Cma-Chr12:100879 Cma12g00621 Cma-Chr12:3272455 5.88E-16 dispersed
Cma12g00621 Cma-Chr12:3272455 Cma04g01746 Cma-Chr4:8772054 1.37E-70 dispersed
Cma05g00115 Cma-Chr5:497946 Cma12g00621 Cma-Chr12:3272455 0 transposed
Cma01g01765 Cma-Chr1:11858719 Cma12g00621 Cma-Chr12:3272455 1.15E-110 wgd
Cma12g00621 Cma-Chr12:3272455 Cma03g00882 Cma-Chr3:6493144 1.80E-169 wgd
Cma12g00621 Cma-Chr12:3272455 Cma05g00114 Cma-Chr5:493551 9.53E-148 wgd
Cma12g00621 Cma-Chr12:3272455 Cma07g00623 Cma-Chr7:2692750 1.51E-172 wgd
Cma12g00621 Cma-Chr12:3272455 Cma09g00322 Cma-Chr9:1326533 4.03E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36005 PF01063 Aminotran_4 4.30E-39 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00621 K00826 - csv:101214004 632.484