Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00621 | ATGACGCAGAAAACGTCTTGTCCAGCACCTAAGTCGCCGGAGACATGGCCGTCGCCGTCGCCGTCGTCCTTGTCTCTCTCTAGCTACCCCATATACAACCCTAATTTTCATTATCATCATCAACAACAACACCAACAAGTTCATGATTTTCAAATAAGTAGCGGTGGGAGTAAGGATACTGATATCATGAAGGCCAAAATCATCTCCCACTCTCAATTCTCTAATCTCCTCCAAGCTTTCTTGGATTGCAAAAAGGTGGGAGCTCCGCCGGAGGTGGCGGCGGAACTTGGGTCGGTAGGGGAGGAGTTTGAGGAGCGGCGGCGGTGTTCAATGGCGGCGAGTGGGGGTTATAGTGATCCAGAACTTGATCAGTTCATGGAAGGTTACTATAGGATGTTGGTGAAGTATAGAGAGGAGCTGACAAAGCCTATTCAAGAAGCTGCTGATTTCATGCTGAGAATTGAATCTCAGCTCAATACTCTCTGTAATGGCTCCTTCCAAATCTTAGCTTCTGATGCAGCGACCGAAGAAAATCGCGACGGAATGGGATCATCGGAGGAGGAGCAAGAGAAGGGGGGCGGGGAAGCCGAAAGAGATGCAACGGAACAGATTGACCCACGAGCAGACGAGCGAGAGCTAAAGAATCACTTACTAAAGAAGTACAGTGGGTATCTGAGCACTCTAAAGCAAGAGCTTTCAAAGAAGAAGAAGAAAGGAAAGCTCCCAAAAGACGCAAGGCAGGAGCTGCTCAGATGGTGGGAAGTGCACAGCAAATGGCCATACCCATCGGAGGCAGAGAAGTTGGCGCTAGCGGAATCAACTGGGTTGGATCAGAAACAGATAAATAATTGGTTCATAAACCAGAGGAAAAGGCATTGGAAGCCGTCTGAGGATGTACAGTTGATGGGTATGGAGGGGTTTTACCATCCCAACACTGCTGCTGCTTTTTACTTCGATGGGCGTTACATGGGCGATGCCCATTACCGACAGACAATTTTGGGAGTGTACGAGCTTGGAGGCGGCTGCCATGGCGATGCGTCTAGGGCTGTATCTTCCATGCCGGAACCTTGCCGGTCATCGCCTTTCAGCGATGATGAGAGCCGTGATATTGATTGGGATAGCCTTGGATTTGGGCTGTTGCCAACAGATTACATGTATGTTATGAAATGCTCTGAAGATGAGAATTTCGAACGAGGTCAGCTGAGTCGTTATGGGAACATTGAGTTAAGCCCTGCTGCTGGGGTTCTAAATTATGGCCAGGGATTGTTTGAAGGTCTGAAAGCATATAGGAAAGAAGATGGAGGCCTTCTTCTCTTTCGTCCGCACGATAATGCTCTTCGTATGAGGACCGGTGCCGAACGAATGTGTATGCCGTCGCCCTCTGTCGAACAATTTGTTGATGCTGTGAAGCAAACTGCCATTGCTAACCGGCGTTGGGTCCCTCCGTCCGGGAAAGGATCATTATACCTGAGGCCCTTGCTCGTCGGAACTGGTCCCGTTCTCGGCTTGGCTCCGGCACCTGAATATACTTTTCTTGTTTATGCTTCCCCTGTTCGCAACTATTTCAAGGAAGATTCAGGAGCCTTGAACCTATACGTCGAGACCAAGTTCGATCGTGCATCTCGTGGTGGAACTGGAGGTGTGAAAACCATCTCAAATTATGCTCCAGCTTTAAAAGCTATCACCAGAGCCAAAAGTAGAGGCTTTTCTGATGTCTTATATCTTGATTCAGTGAATAAGAGAACTCTGGAGGAAGTTTCTTCTTGCAACATTTTTCTTGTCAAGGGAAATGTTATATCAACTCCTGCTACAAGTGGAACGATTCTTCCAGGAGTAACCCGGAAAAGCGTCATCGATATAGCCCGTAATCGCGGTTACGAGGTTGAGGAACGGGCTATCGACATGGATGAACTGTCCGACGCTCGTGAAGTTTTCTGCACGGGAACTGCTGTCGGTGTGGCCCCTGTTGGCAGCATCACTTGTCTGGATAAAAGGATTGAGTACCAAACAGGTGCTGGGACAACATGTCAGGAACTATACTCAACTCTTGTTGGGATTCAAACTGGAACCACCGAGGATAAGATTGGCTGGACTGTTGAGATCTCTTAA | 2109 | 48.36 | MTQKTSCPAPKSPETWPSPSPSSLSLSSYPIYNPNFHYHHQQQHQQVHDFQISSGGSKDTDIMKAKIISHSQFSNLLQAFLDCKKVGAPPEVAAELGSVGEEFEERRRCSMAASGGYSDPELDQFMEGYYRMLVKYREELTKPIQEAADFMLRIESQLNTLCNGSFQILASDAATEENRDGMGSSEEEQEKGGGEAERDATEQIDPRADERELKNHLLKKYSGYLSTLKQELSKKKKKGKLPKDARQELLRWWEVHSKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQLMGMEGFYHPNTAAAFYFDGRYMGDAHYRQTILGVYELGGGCHGDASRAVSSMPEPCRSSPFSDDESRDIDWDSLGFGLLPTDYMYVMKCSEDENFERGQLSRYGNIELSPAAGVLNYGQGLFEGLKAYRKEDGGLLLFRPHDNALRMRTGAERMCMPSPSVEQFVDAVKQTAIANRRWVPPSGKGSLYLRPLLVGTGPVLGLAPAPEYTFLVYASPVRNYFKEDSGALNLYVETKFDRASRGGTGGVKTISNYAPALKAITRAKSRGFSDVLYLDSVNKRTLEEVSSCNIFLVKGNVISTPATSGTILPGVTRKSVIDIARNRGYEVEERAIDMDELSDAREVFCTGTAVGVAPVGSITCLDKRIEYQTGAGTTCQELYSTLVGIQTGTTEDKIGWTVEIS | 702 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3272455 | 3285625 | - | CmaCh12G006210.1 | Cma12g00621 | 305111 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00621 | 702 | ProSiteProfiles | 'Homeobox' domain profile. | 232 | 295 | IPR001356 | GO:0003677 | |
Cma12g00621 | 702 | SMART | KNOX1_2 | 61 | 105 | IPR005540 | GO:0003677|GO:0005634 | |
Cma12g00621 | 702 | Pfam | ELK domain | 212 | 233 | IPR005539 | GO:0003677 | |
Cma12g00621 | 702 | SUPERFAMILY | D-aminoacid aminotransferase-like PLP-dependent enzymes | 362 | 698 | IPR036038 | GO:0003824 | |
Cma12g00621 | 702 | SMART | KNOX2_2 | 112 | 163 | IPR005541 | GO:0003677|GO:0005634 | |
Cma12g00621 | 702 | ProSitePatterns | 'Homeobox' domain signature. | 270 | 293 | IPR017970 | GO:0000981|GO:0006355 | |
Cma12g00621 | 702 | SMART | ELK_2 | 212 | 233 | IPR005539 | GO:0003677 | |
Cma12g00621 | 702 | SMART | ELK_2 | 121 | 141 | IPR005539 | GO:0003677 | |
Cma12g00621 | 702 | Gene3D | - | 351 | 531 | IPR043131 | - | |
Cma12g00621 | 702 | PANTHER | BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE | 343 | 701 | - | - | |
Cma12g00621 | 702 | ProSitePatterns | Aminotransferases class-IV signature. | 585 | 614 | IPR018300 | GO:0003824 | |
Cma12g00621 | 702 | Pfam | KNOX1 domain | 63 | 104 | IPR005540 | GO:0003677|GO:0005634 | |
Cma12g00621 | 702 | SMART | HOX_1 | 234 | 299 | IPR001356 | GO:0003677 | |
Cma12g00621 | 702 | SUPERFAMILY | Homeodomain-like | 233 | 304 | IPR009057 | - | |
Cma12g00621 | 702 | Gene3D | - | 229 | 302 | - | - | |
Cma12g00621 | 702 | MobiDBLite | consensus disorder prediction | 179 | 211 | - | - | |
Cma12g00621 | 702 | Gene3D | - | 532 | 701 | IPR043132 | - | |
Cma12g00621 | 702 | ProSiteProfiles | ELK domain profile. | 212 | 232 | IPR005539 | GO:0003677 | |
Cma12g00621 | 702 | Pfam | KNOX2 domain | 118 | 162 | IPR005541 | GO:0003677|GO:0005634 | |
Cma12g00621 | 702 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cma12g00621 | 702 | Pfam | Homeobox KN domain | 252 | 291 | IPR008422 | GO:0003677|GO:0006355 | |
Cma12g00621 | 702 | MobiDBLite | consensus disorder prediction | 175 | 211 | - | - | |
Cma12g00621 | 702 | CDD | homeodomain | 244 | 296 | IPR001356 | GO:0003677 | |
Cma12g00621 | 702 | PANTHER | AMINO ACID AMINOTRANSFERASE | 343 | 701 | IPR005786 | GO:0004084|GO:0009081 | |
Cma12g00621 | 702 | Pfam | Amino-transferase class IV | 421 | 659 | IPR001544 | GO:0003824 | |
Cma12g00621 | 702 | TIGRFAM | ilvE_II: branched-chain amino acid aminotransferase | 397 | 701 | IPR005786 | GO:0004084|GO:0009081 | |
Cma12g00621 | 702 | CDD | BCAT_beta_family | 408 | 689 | IPR033939 | GO:0004084|GO:0009081 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g00026 | Cma-Chr12:100879 | Cma12g00621 | Cma-Chr12:3272455 | 5.88E-16 | dispersed | |
Cma12g00621 | Cma-Chr12:3272455 | Cma04g01746 | Cma-Chr4:8772054 | 1.37E-70 | dispersed | |
Cma05g00115 | Cma-Chr5:497946 | Cma12g00621 | Cma-Chr12:3272455 | 0 | transposed | |
Cma01g01765 | Cma-Chr1:11858719 | Cma12g00621 | Cma-Chr12:3272455 | 1.15E-110 | wgd | |
Cma12g00621 | Cma-Chr12:3272455 | Cma03g00882 | Cma-Chr3:6493144 | 1.80E-169 | wgd | |
Cma12g00621 | Cma-Chr12:3272455 | Cma05g00114 | Cma-Chr5:493551 | 9.53E-148 | wgd | |
Cma12g00621 | Cma-Chr12:3272455 | Cma07g00623 | Cma-Chr7:2692750 | 1.51E-172 | wgd | |
Cma12g00621 | Cma-Chr12:3272455 | Cma09g00322 | Cma-Chr9:1326533 | 4.03E-120 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36005 | PF01063 | Aminotran_4 | 4.30E-39 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00621 | K00826 | - | csv:101214004 | 632.484 |