Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00622 ATGATCACTGAATCAATGCTTCTCAATCCATTGGCCCATTTTTCATCCTGGGACTCCCTCGACGATCCCACCGTCGCCGCCGCCGCCGCAATCTCCTCCTATCTCACTTCCGGTCACGTGTCGCCGCTTGATTCGCCTACGAGAGCGGTTATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATCTGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTTCGCTCGTGCGCACGTGGGAGGTCGCACGATTGGACTAAATGTCCGTACGCTCACGCCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAACTATTCTGGTACTGAATGCCCTGCTTTACGCCATGGGTGCTGTAAGAAAGGGGACGCCTGTGAGTTCGCTCATGGGACATTCGAAATTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGGTAAGGAAATCGACGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAATCCCGGCCGTCTCCGGCTTCGTTTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA 927 56.2 MITESMLLNPLAHFSSWDSLDDPTVAAAAAISSYLTSGHVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAGKEIDAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKIPAVSGFVSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3290026 3290952 + CmaCh12G006220.1 Cma12g00622 305112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00622 308 SMART c3hfinal6 149 172 IPR000571 GO:0046872
Cma12g00622 308 SMART c3hfinal6 114 140 IPR000571 GO:0046872
Cma12g00622 308 Gene3D - 110 183 - -
Cma12g00622 308 PANTHER UNKEMPT FAMILY MEMBER 27 304 IPR045234 -
Cma12g00622 308 ProSiteProfiles Zinc finger C3H1-type profile. 114 141 IPR000571 GO:0046872
Cma12g00622 308 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 27 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00622 Cma-Chr12:3290026 Cma12g01284 Cma-Chr12:9983593 7.27E-74 dispersed
Cma01g01767 Cma-Chr1:11875855 Cma12g00622 Cma-Chr12:3290026 6.54E-96 wgd
Cma10g00690 Cma-Chr10:3123164 Cma12g00622 Cma-Chr12:3290026 3.50E-85 wgd
Cma12g00622 Cma-Chr12:3290026 Cma05g00112 Cma-Chr5:487440 1.66E-165 wgd
Cma12g00622 Cma-Chr12:3290026 Cma09g00326 Cma-Chr9:1342960 3.06E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36006 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00622 - - cpep:111798847 600.512