Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00625 ATGGCGAACACTCCTCCTCCTCACCAGACGTATATTCCTCTGCCTTCCGACTCAGGCGAAAATCAGACTGATCCGGAAGCCAACGCAACCTTGGTTCCTATTCATATTGTTACTCATGCATCTCAACTCCCTAAAGAATTTGTTGACCCATCGCCTAGAAAGCATCTAGTAGTTGGCTTTGATTGTGAAGGTGTTGACCTATGTCGCCATGGAAACCTCTGTATAATGCAGATTGCATTTCCCGATGCTGTGTATCTGGTTGATGCTGTTCAGGGAGGAGAGGAACTTGTGAAAGTCTGTAAGCCTGCTCTTGAGTCCGAATATGTCACAAAAGTTATACATGATTGTAAACGAGACAGCGAGGCATTGTACTTTCAGTTTGGAATCAAGTTGAATAACGTTATTGATACTCAGATTGCATATTCACTTATAGAGGAGCAAGAGGGACGGACCAAGTTACCTGATAACTATATCTCCTTTGTTAGTCTTCTTGCAGATTCACGTTATTGTGGTGTATCATATCAGGAGAAGGAAGAGGTTCGCCTCCTACTTAGGCAGGACCCTCTGTTTTGGACATATAGACCATTGTCTGAATTGATGGTCCGTGCAGCTGCTGATGATGTACGCTTTCTTCTTTACATCTACCACAAGATGATGGAGAAATTGAATCAACAATCGCTGTGGTACCTTGCAGTGCGTGGTGCTTTGTACTGTCGGTGTTTTTGCATCAGTGATAATGAATATACTGACTGGCCTCCTCTCCCTTCTGTTCCAGATAACCTTGTAGTAGAGGGCAATGCTCCTGAAGAAGAAATTCTTTCAGTCTTAGATGTTCCCTCTGGAATGATGGGACGCGTAATTGGTAGGAGAGGATCCTCAATTTTGTCAATAAAGGAATCCTGCAATGCGGAAATTCTCATTGGCGGCGCTAAGGGCCCACCGGACAAGGTATTCATCATCGGATCGGTGAGGCAGGTGAGGAAGGCAGAAGCGATGCTAAGAGGAAGGATGCTTGAAATATGA 1023 44.57 MANTPPPHQTYIPLPSDSGENQTDPEANATLVPIHIVTHASQLPKEFVDPSPRKHLVVGFDCEGVDLCRHGNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDSEALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEVRLLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNQQSLWYLAVRGALYCRCFCISDNEYTDWPPLPSVPDNLVVEGNAPEEEILSVLDVPSGMMGRVIGRRGSSILSIKESCNAEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLEI 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3305456 3311917 - CmaCh12G006250.1 Cma12g00625 305115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00625 340 CDD KH-I 276 333 - -
Cma12g00625 340 SMART 35exoneu6 34 223 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cma12g00625 340 SMART kh_6 270 338 IPR004087 GO:0003676
Cma12g00625 340 MobiDBLite consensus disorder prediction 1 25 - -
Cma12g00625 340 Pfam KH domain 276 334 IPR004088 GO:0003723
Cma12g00625 340 PANTHER EGALITARIAN, ISOFORM B 5 338 - -
Cma12g00625 340 Gene3D - 4 239 IPR036397 GO:0003676
Cma12g00625 340 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 267 338 IPR036612 GO:0003723
Cma12g00625 340 CDD Egl_like_exo 47 242 - -
Cma12g00625 340 PANTHER - 5 338 - -
Cma12g00625 340 Pfam 3'-5' exonuclease 53 222 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cma12g00625 340 Gene3D K Homology domain, type 1 261 338 IPR036612 GO:0003723
Cma12g00625 340 ProSiteProfiles Type-1 KH domain profile. 271 333 - -
Cma12g00625 340 SUPERFAMILY Ribonuclease H-like 27 248 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00625 K18740 EXD1, EGL; exonuclease 3'-5' domain-containing protein 1 - csv:101214970 649.432
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00110 Cma12g00625 CCT
Cma05g00110 Cma12g00625 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00226 Cma-Chr3:3380715 Cma12g00625 Cma-Chr12:3305456 5.71E-08 dispersed
Cma11g01824 Cma-Chr11:12163643 Cma12g00625 Cma-Chr12:3305456 1.66E-08 dispersed
Cma12g00625 Cma-Chr12:3305456 Cma05g00110 Cma-Chr5:471827 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g47 . . . . . . . . Cmo05g00116 Cmo12g00562 . Cma05g00110 . Car12g00572 Sed14g1534 Cpe07g00545 . Bhi04g00482 Tan02g2217 Cmetu04g2861 . Hepe08g1373 . Lcy13g2168 . . . . . . . . . Cone17ag0911 Cone20ag0254 . . . . . . . . . . . . . . . . Cma12g00625 . Car05g00095 Cpe11g00090 . . . . . . . . . . . . . . . Lsi08g01564 Csa02g01857 Chy03g01628 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006700 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00625 Cma_Chr12 FPKM 139.314514 145.463837 62.057961 57.453602 38.241589 41.815891 37.218781 54.356758 52.681442 55.87027