Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00626 ATGAAGAGAGGAAGGGATGATGAGAAGAGAATGGAACCTATGTTCCCTAGGCTCCATATTAATGATACCGAGAAAGGATGTCCAAGAGCGCCTCCAAGGAATAAGATGGCCCTGTATGAACAGTTCACTGTACCATTAAAACGTTCCAGTCCCCGGGTTTTGCCTCTCCCCACAAACATCTCCAGAAAGCCACTCACCGCACCATCCTCAAGCCAGGGTAGAGGAACTGATGGAAATCTGCGCCTGCCATTAAACTCGTCTTCCCCAGCACCTCCTAATCAGGTTGGAAATTCACATGCTCACCCATCTAGTGAAGTAAATGTGAATCCTCCATCGGTACAGCTCGAGCAGAGGCAGCAGACAGCAGAAGTAGAAGATGAAGACGATTTTACGGTTCCAGTATACAATCAATCAGAGATGGGTAAAAATAGAGTTCAAAATAGTGACCACAAGGAACAATTGTCTTTTCCTGGATCAAAACATTCTGATTGTTCTACAGTTTTGCAATCATCCTCTGTTGCCCAATCAAGTCGAGAAGTAACAACTAGGAAGACAGTGAATGACAAACATAGGGTCCGTTCTGCGAAGTCCACGACAAATTTATTGGATAGAGAGGTTACTGATGGACTTCAGAAGGAAACTAATGTATCTGAAGATCAAGAATTTCAAGATAAATCGAACATTAGTGTCGACAAATTGCAAGATAGTGATGTTCAATTACAGAGACATTCTAGTTCCAGCATTCAATTGGATGAGAGCGGAGTTGTTGAGGACGTTATTGAGCCTACAAGATTTCGAGTGGTAGACAGTGTTCCCTGCACAAGAGTGGACTCCCATTCCTTGGAAAAGAATGAGAACTTGAACATGCCTGTTGACAACGTTGAGAATTGTGTAGATAGGACTCATAGTTCCGTGCACGTGGGGAATGCAGACAAAAGTGACATTGTCTCTGAGAATTCAATGGTCGACTCAATTTCTGGCTCGGATATCTGTCCAGATGATGTTGTAGGGCTAATAGGTCAAAAACGTTTCTGGAAAGCCAGAAGAGCAATTATTAATCAACAAAGAGTGTTTGATGTTCAAGTGTTCGAATTGCATAGACTTATCAAGGTCCAACGCTTAATTGCTGGATCTCCTCATCTTTTATTTGAAGATGGGATTTTTCTGGACAATTCTCCTCCAAGCCGTCTTCCTACGAAGAAACTTAGCTCAGATTACGCCATCAAATCACACATCGAGCTTAAGCATAACGATGACTTGAAGAAGCCAAAACACAATGTGGAATGTTCAGCAGAAAACGCTGTTGGGAAGGCTTCTCTTTCTCCTGCACCGGTTGCACCGGTCGGTTGTCAGCCTTCAACGAACGGGCCTTACAAAGTAAATCGACAGCCAACGTCTGTTTCCACTGATAATAAATTAAGCAGTTGGTACCAGCCATCTGCAGCACATCAGTGGCTGGTCCCGGTATTGTCTCCTTCTGAAGGACTCGTATATAAGCCTTACCCTGCGCCCGGATTCATGTATGGAGGATGTGCACCTTATGGTCCGATGACTCCAATCATGAATCCGTCCTACGGATTTCCAGCTTCTGCTCATCATGGAATCGGGGCGCTTCCTAGTACTCCCATGGTTGGTGGTACTTACTTCCACCCTTATGGCATGCCGGTCATGAATCCTGGTATGTCGGGTTTGGCCCTCGATCAAGTTAACTGGTACAAGGGAGATCAGAATCAGTTATCGGGAGGTGTGGCTGCTTACTATATGCAGCATCAAACATCATATGATGTTTCAACACAGAGAGACAGAGATGAAAATCAAGAAACTGTTTCACTAACTGCAAAGTCTCAAGCACCAAAAAGCAATGAGCTACAAGCAAGTACTGCAAGTAGTCCTGCTGGAAAACTGCAAGGAAACGAAGCAAATCGAACCGCCGAAAGCCACGACGCGCTTCCACTTTTCCCTATAGCTCAGCCACTTACAGAGGAAGGTCCTCAACCTTCAGACTCCGACCAAACGAAACGGGTCAAATGCGGGAGATGCGGAGAGTTGAGCCAGAAAGAAACTTGTGTGACCTTGAATGAAACTATTCCTCTCCAAGCGGGTAAAGGGACTACTAATCTCGTTCAAAAGTGCAAGTTCTGTGGGAGGGATGGAACTATTACAATGATTCCGGGGCGAGGTCAACCATTGACTCAGGAAACAAGTGAATCAGGGAAATCATCTCCCTTGATGTTATTTGACTGCAGAGGTTATGAGCCTGTGGGCTTCATATTTGGACCTGGATGGAAAGCAGAATCTATAGAAGGGACCAAGTTCGAGGACATTGACTTGTCTGGAGGCTTTGCGGAAATTCATTTCTCATTTCCAACCAAAGAGGCCTTCTCTCGGTCTCTCTTCTTTCAATCCATCTCTTCCTCTCGCCGGAGCCTCAACAAACAAATATCTGAAACAATGGCCACCGTCTACAAAGCTTCTCTTATGGCTCTCATTGCCCTCATCATCGCCGTCGCTTCCGTCGCAGCTCAGGAGGCTCCGGCGCCCAGCCCTGCCTCCCCTGCTTCCTCGATTGCTCCGTCGTTCGTCTCCGCTTGCACCGCCTTCTTCGTCGCTCTCGTCCTTGGATCTACTCTCAGGATCTGA 2640 46.02 MKRGRDDEKRMEPMFPRLHINDTEKGCPRAPPRNKMALYEQFTVPLKRSSPRVLPLPTNISRKPLTAPSSSQGRGTDGNLRLPLNSSSPAPPNQVGNSHAHPSSEVNVNPPSVQLEQRQQTAEVEDEDDFTVPVYNQSEMGKNRVQNSDHKEQLSFPGSKHSDCSTVLQSSSVAQSSREVTTRKTVNDKHRVRSAKSTTNLLDREVTDGLQKETNVSEDQEFQDKSNISVDKLQDSDVQLQRHSSSSIQLDESGVVEDVIEPTRFRVVDSVPCTRVDSHSLEKNENLNMPVDNVENCVDRTHSSVHVGNADKSDIVSENSMVDSISGSDICPDDVVGLIGQKRFWKARRAIINQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHIELKHNDDLKKPKHNVECSAENAVGKASLSPAPVAPVGCQPSTNGPYKVNRQPTSVSTDNKLSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAHHGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLALDQVNWYKGDQNQLSGGVAAYYMQHQTSYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPAGKLQGNEANRTAESHDALPLFPIAQPLTEEGPQPSDSDQTKRVKCGRCGELSQKETCVTLNETIPLQAGKGTTNLVQKCKFCGRDGTITMIPGRGQPLTQETSESGKSSPLMLFDCRGYEPVGFIFGPGWKAESIEGTKFEDIDLSGGFAEIHFSFPTKEAFSRSLFFQSISSSRRSLNKQISETMATVYKASLMALIALIIAVASVAAQEAPAPSPASPASSIAPSFVSACTAFFVALVLGSTLRI 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3316405 3326185 + CmaCh12G006260.1 Cma12g00626 305116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00626 879 Pfam CXXC motif containing zinc binding protein, eukaryotic 674 779 IPR008584 -
Cma12g00626 879 MobiDBLite consensus disorder prediction 595 644 - -
Cma12g00626 879 MobiDBLite consensus disorder prediction 1 223 - -
Cma12g00626 879 PANTHER PROTEIN EARLY FLOWERING 3 1 675 IPR039319 GO:2000028
Cma12g00626 879 MobiDBLite consensus disorder prediction 182 198 - -
Cma12g00626 879 MobiDBLite consensus disorder prediction 609 643 - -
Cma12g00626 879 MobiDBLite consensus disorder prediction 62 119 - -
Cma12g00626 879 MobiDBLite consensus disorder prediction 206 223 - -
Cma12g00626 879 MobiDBLite consensus disorder prediction 1 29 - -
Cma12g00626 879 MobiDBLite consensus disorder prediction 158 181 - -
Cma12g00626 879 SUPERFAMILY MAL13P1.257-like 674 779 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00626 K12125 ELF3; protein EARLY FLOWERING 3 - csv:101203735 1030.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00753 Cma-Chr8:4516487 Cma12g00626 Cma-Chr12:3316405 2.56E-17 dispersed
Cma12g00626 Cma-Chr12:3316405 Cma17g00745 Cma-Chr17:6053529 1.03E-79 dispersed
Cma05g00109 Cma-Chr5:465858 Cma12g00626 Cma-Chr12:3316405 1.01E-74 transposed
Cma01g01749 Cma-Chr1:11806686 Cma12g00626 Cma-Chr12:3316405 6.06E-06 wgd
Cma12g00626 Cma-Chr12:3316405 Cma05g00107 Cma-Chr5:460870 1.32E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g50 . . . . Bpe02g01533 . . . . Cmo12g00566 . . . Car12g00574 . Cpe07g00547 . Bhi04g00488 . . . Hepe08g1376 . Lcy13g2172 . . . . . . . . . Cone17ag0914 Cone20ag0256 . . . . . Blo18g00292 Bda01g01322 . . . Bma01g00930 . . . . . Cma12g00626 . . . . . . . . . . . . . . . . . . Lsi08g01568 Csa02g01852 Chy03g01631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005519 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 1 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00626 Cma_Chr12 FPKM 68.647018 70.343636 35.57225 35.630783 22.526506 21.382544 21.462765 15.745367 14.710587 16.185295