Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00627 ATGAGAGGGAATACCAACGGCGGCGGCAGATCAATAAGCTCACCGGAGAAGAGAGCGGCGTGTAATCACGGCAACCACCACAAAAGCGGGGGAAGTGAATCAGAAACAAAGGAAGGAGGGTCATCGTCCGGCAGCGGAGAAGGGGGAGTGTGGCTGCCGGAGTTCGTAATAGCCTTAACGAATAAAGAGAAGGAAGAAGATTTCATGGCGATCAAAGGGTGTAAGCTGCCTCTCAGACCTAAAAAACGGCCCAAAATTATTCAACGCACCATCAATCTGGTGAGCCCAGGGACGTGGCTGTGTGATCTAACGCTGGACAGATACGAAGTCAGGGAAAAGATGTCTAAAAAGAGACGAAGAGGGCTTAAAGCAATAGTGAAAGTGGAGTCAGATTCGGAGTGGGAAAGGCATAGTTCATGA 420 49.76 MRGNTNGGGRSISSPEKRAACNHGNHHKSGGSESETKEGGSSSGSGEGGVWLPEFVIALTNKEKEEDFMAIKGCKLPLRPKKRPKIIQRTINLVSPGTWLCDLTLDRYEVREKMSKKRRRGLKAIVKVESDSEWERHSS 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3327823 3329317 - CmaCh12G006270.1 Cma12g00627 305117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00627 139 PANTHER PUTATIVE (DUF1639)-RELATED 3 133 - -
Cma12g00627 139 Pfam Protein of unknown function (DUF1639) 59 108 IPR012438 -
Cma12g00627 139 MobiDBLite consensus disorder prediction 1 49 - -
Cma12g00627 139 MobiDBLite consensus disorder prediction 20 34 - -
Cma12g00627 139 PANTHER INTEGRATOR COMPLEX SUBUNIT 6 HOMOLOG 3 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00627 - - - cmos:111454377 227.639
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01748 Cma12g00627 CCT
Cma05g00106 Cma12g00627 CCT
Cma09g00328 Cma12g00627 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00627 Cma-Chr12:3327823 Cma14g01090 Cma-Chr14:7759315 5.70E-33 dispersed
Cma18g01009 Cma-Chr18:8459894 Cma12g00627 Cma-Chr12:3327823 4.00E-13 dispersed
Cma01g01748 Cma-Chr1:11802994 Cma12g00627 Cma-Chr12:3327823 1.88E-22 wgd
Cma12g00627 Cma-Chr12:3327823 Cma05g00106 Cma-Chr5:456538 5.14E-54 wgd
Cma12g00627 Cma-Chr12:3327823 Cma09g00328 Cma-Chr9:1350511 5.22E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g52 Blo01g01476 Blo12g01007 Bda01g00610 Bda03g00150 . . . Bma01g02222 Cmo05g00112 Cmo12g00568 Cma01g01748 Cma05g00106 Car09g00277 Car12g00575 Sed08g1756 Cpe07g00548 Cpe06g00233 Bhi04g00489 Tan02g1657 Cmetu03g1033 . Hepe08g1378 . Lcy13g2173 Cla05g01816 Cam05g1940 Cec05g1953 . Clacu05g1932 Cmu05g1813 Cre05g1939 Cone4ag1648 . Cone17ag0915 Cone20ag0257 Lsi04g01438 . . . . . . . . Bpe04g00133 . . Sed11g1844 Cmo01g01761 Cmo09g00326 Cma09g00328 Cma12g00627 Car01g01360 Car05g00092 Cpe11g00086 Cpe02g00250 Bhi09g03175 Tan01g4647 Cmetu07g1833 . . . . . . . . . . . Lsi08g01570 Csa02g01850 Chy03g01633 Cme07g00240
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020043 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00627 Cma_Chr12 FPKM 2.810997 2.684489 7.228122 6.952213 1.404392 1.261184 1.653851 4.886856 5.511756 4.751477