Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00631 ATGGCTGACGAAGCGCAGTATTCATCTGGTACCGATGCTGCGTCCAATAAGCGGAAGTACGATGACCATCCTCCACCTATGGTTTCCCGCCGGCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATTCGGCCAATCCTGCGCCTCCCTCCTACAACAACGTCCCGCCTCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGCGGTGGCGTGGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGACTTAAAGTCTCACATGTCTAATTCAGCTCCTTCAGCAACACCTGTTTCCTATGGGTTTCAAGGGACAAGCAAAAAAATCGACATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGATGCAGATCCCAATTCTGCTACCCGGACGGTTGATCTAATGGGTACTCCTGATCAAATTGCTAAGGCCGAGCAGTTGATTAATGATGTTCTTTCCGAGGCTGAATCTGGAGGTTCTGGCATAGTATCTCAAAGATTGACTGGTTCATCGGGATCTGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAAGCCAGGACTGGAGCTCGTATTCAGGTGATACCTTTGCACTTACCCCCTGGGGATACATCTACAGAAAGAACCTTACAGATTGATGGTTCAAGCGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTACCAGTGAGAATCGTGTGAGAAATTCAGGTATGTCAGGAGGGTATCAAACTCGACCCCCTTCAAGTTGGGGGCCTCCTGGGGCTCCTCCAATGCAGCAACCTGGTTATGGCTATGGACAGCAAGGTGGATACTCTGGCCCTTCATCTCAGTATAACATGCAACAACCTCCTTATCAAGGTTATTCACAACCTGCATCTGGTGGATATGCTTCCAATTGGGACCAGTCTACTGTTCCACCAAATCAACCTGCTACTCAGGGAAGTGGTTATGATTACTACAATCAACAGCCCCCGCAGCAACAGCAGACTCCTGGAGCTCCTCATGGTGCTACAGGAGACAACTCTGGTTACAGTTATGGTCAACCACAGGCCTCTACCTACAATCAACAGGGTTATTCTCAAGATGGCTATGGTGGTGGTTATCATGCACCTCAGGCTGGTTACAGCCAGCCACCTACGTATGATCAGCAAGGCTATAGTTCTGCTCCAAACTATGGTAACGTGGCCAATGCAGCCCAAGATGGGATCAATTCATACGAGTCTCAGGGGGATTCATCACAGACAGTCCCTCCTGCACAACCCTCTTCGGTGAGCCAGCAAGGTTATGGTGTAAATCAACAGCCTAGTCCTAACCCAGGGAGCTACCCTCCACCAAATCAGTCAGGGTACGGAATGACTGCACCTTCTCATACTGGTTATGGAAATCAACCAGCCGCTCAAACCGGGTATGGGGCTAGTTATGGACCTCCTCAAACTCAGAAACAACCTGCAAATCCTCCTGCATATGGTCAGAGCACTCAGTCGCCAAGCACCCCGAGTGGCTATGGGCAACCTGCTGCATTGTCGTCTGGGTATTCCAGTTCTCAGGCTCCCACGTCTGGGTACACTCAATCAGATTCCGGTTCTCAACGTGTCCCACCATCCAGTTATGGTACTGCAGCTCAGCCAGGGTTTGCGCCACCTTATGGTGTTCCTCCAACAAATCAGCCAGGTTACGGGCAAGCTCCACCACCTTATAGCTCTTCTTATGGTGCTGGTTACCCTCAGCCTCCATACTCTTCCGATGGTAACGCAGGTGGAGCTGCTGCTCAATCGGCGCTGCAAAGTGGGGTTGCAAAAGCATCACCAAAGAGTTGA 2049 50.12 MADEAQYSSGTDAASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDSANPAPPSYNNVPPPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSDLKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTSENRVRNSGMSGGYQTRPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQQPPYQGYSQPASGGYASNWDQSTVPPNQPATQGSGYDYYNQQPPQQQQTPGAPHGATGDNSGYSYGQPQASTYNQQGYSQDGYGGGYHAPQAGYSQPPTYDQQGYSSAPNYGNVANAAQDGINSYESQGDSSQTVPPAQPSSVSQQGYGVNQQPSPNPGSYPPPNQSGYGMTAPSHTGYGNQPAAQTGYGASYGPPQTQKQPANPPAYGQSTQSPSTPSGYGQPAALSSGYSSSQAPTSGYTQSDSGSQRVPPSSYGTAAQPGFAPPYGVPPTNQPGYGQAPPPYSSSYGAGYPQPPYSSDGNAGGAAAQSALQSGVAKASPKS 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3344586 3351257 - CmaCh12G006310.1 Cma12g00631 305121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00631 682 MobiDBLite consensus disorder prediction 303 682 - -
Cma12g00631 682 MobiDBLite consensus disorder prediction 522 614 - -
Cma12g00631 682 MobiDBLite consensus disorder prediction 662 682 - -
Cma12g00631 682 ProSiteProfiles Type-1 KH domain profile. 141 208 - -
Cma12g00631 682 Coils Coil 287 307 - -
Cma12g00631 682 MobiDBLite consensus disorder prediction 34 51 - -
Cma12g00631 682 MobiDBLite consensus disorder prediction 342 439 - -
Cma12g00631 682 MobiDBLite consensus disorder prediction 453 513 - -
Cma12g00631 682 MobiDBLite consensus disorder prediction 86 106 - -
Cma12g00631 682 CDD KH-I 143 208 - -
Cma12g00631 682 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 103 662 - -
Cma12g00631 682 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 233 311 IPR036612 GO:0003723
Cma12g00631 682 Pfam KH domain 145 210 IPR004088 GO:0003723
Cma12g00631 682 Pfam KH domain 237 303 IPR004088 GO:0003723
Cma12g00631 682 SMART kh_6 232 306 IPR004087 GO:0003676
Cma12g00631 682 SMART kh_6 140 213 IPR004087 GO:0003676
Cma12g00631 682 Gene3D K Homology domain, type 1 138 230 IPR036612 GO:0003723
Cma12g00631 682 Gene3D K Homology domain, type 1 231 345 IPR036612 GO:0003723
Cma12g00631 682 MobiDBLite consensus disorder prediction 303 323 - -
Cma12g00631 682 CDD KH-I 236 301 - -
Cma12g00631 682 PANTHER FAR UPSTREAM ELEMENT-BINDING PROTEIN 2-LIKE ISOFORM X1 103 662 - -
Cma12g00631 682 MobiDBLite consensus disorder prediction 623 637 - -
Cma12g00631 682 MobiDBLite consensus disorder prediction 1 61 - -
Cma12g00631 682 ProSiteProfiles Type-1 KH domain profile. 233 301 - -
Cma12g00631 682 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 144 218 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00631 K13210 FUBP; far upstream element-binding protein - csv:101216803 1069.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00102 Cma12g00631 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01770 Cma-Chr11:11839677 Cma12g00631 Cma-Chr12:3344586 1.06E-87 dispersed
Cma12g00631 Cma-Chr12:3344586 Cma19g00624 Cma-Chr19:6738759 4.64E-89 dispersed
Cma12g00631 Cma-Chr12:3344586 Cma05g00102 Cma-Chr5:433008 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g62 . . . . . . . . Cmo05g00109 Cmo12g00572 . Cma05g00102 . Car12g00580 Sed08g1760 Cpe07g00553 . Bhi04g00496 Tan02g1648 Cmetu03g0500 . Hepe08g1383 . Lcy13g2177 . . . . . . . Cone4ag1652 . Cone17ag0917 Cone20ag0260 . . . . Blo17g00293 Blo18g00287 . Bda13g01608 Bpe14g00257 . . . . . . . Cma12g00631 . Car05g00374 Cpe11g00082 . . . . . . . . Cla08g01021 Cam08g1470 Cec08g1048 Cco08g1172 Clacu08g1174 . Cre08g0956 Lsi08g01575 Csa02g01846 Chy03g01638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007208 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00631 Cma_Chr12 FPKM 69.667854 70.435806 80.645966 80.80896 112.102318 112.713432 106.572884 105.569901 100.532333 95.311829