Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00634 ATGGCAGAGCTCTGGATTCAAGAAGCCATTGTAATGGAAAATGGATTCTTGATCCGAGAAATGAAGTCCATCGGATTGCATGGTTTCATCATATGGTTCGGATTCAAGCAGTCCATAAGAGCCAAAACAAACAGATGGGGTGTTTGGGTACTGACAAGACCTGGCAGGAACAGAAGTTTCAACAAAGAGAATCCAGATATTTGGATTACGATGACTGCAGTGGATCAGAAAATGAGCGGTCGTGAGCAGGACAAAGGAGATGGCACAGAGAGAAGGACATGGGCCATCAGCCTTAAACAAAGAGTGAGTGGTTCTCCAAACTTGCACCTTTTTATGGAGATACAAAAGCCAAGTTCTTTGAATCTTCTTCTCTTGCTTCTTTGGGATGTCTCAGATCTCCTATGGGGAGTTTTCGTCTACAATGCTTCAAAGTTGGAGAGTGACTTGAGGAATGCTCTGGTGAATATGGCCAGTACAAATTCTGTCATTGTAGCTGGATTTCCTATCCTTTTGACTCTGCGGGAATCTGGATGCCCTGCTACTGATGCAGATGATCATATAGTTGATCAATTGGGGTTCTTAGGCTCTTCTCCAATGTTCACTGCCCCACAACGGAACGATTTGGTGGATGTTTCCGGAGGTTGTTTGAATCTCTCTAGTAATGCTGAGTTTCAAGATCAGCTAGCCGGAGCAATTCCTATTGCTTCTGTTTCTCCAGTGGATGCAAAAGATTCAGCATTTTCAGCCCCTCAGTTCCAGCAATTAGAGACTTTTAGAACCTGCTTCGAACACAGTTCCTCTAATGCTTCAAACTCATCATTTGCAAGTTCTCTAAACTGTGAACGTGACGAGTCTCTATGTAATGCAAATAACGAGTGGGAAAACGGTCATTTTCTTTATAATCAGCCAATTGCTAGGGATAATCCAGTAAGATCAGATTTCCAGACCATTTCATCGATGGAAAACCTGGTTCAGAATGGCTGGATGCCATCCAACACTATGAACTCCAAGTTATGGAATGAGCTTTCTCTGAGTCTAGCCACTTCCGAACCTGTGATCGTTGGAGGAACCAATTTCCTGGACCAGTATTCACAGCTGACTTTTTCTGGTGCTACTCAGCCTTGCTTGAACAACACAGAATTAGCCTGCAACTCCATGGACCTCTCTCTAAGTTACAGTTATGGTAGTAGTCCTGTTCATCCCTCTCAAGCAATATCAGGATCAAGATATCTTTCCGTCATTCAGGACATACTTTCCCAAATTGCAAGCTATCCACTGGAAAGTTCAGATCAAGTTAGCCATTCATCAACCACAGTTGGATTTGTCCCATTCTCATCAAGTTCCCTAGAGACTCAATGGCCGAAACCATCTGGTGATGCCAAGAGATCCCATCTGTTGACTTTACAACAACTGATTGATGAGAGGTACACTCAATGCTTGGACGAGATTCATACTGTTACATCTGCATTTCATGCTGCCACCGATTTGGATCCTCGCTTGCATTCTCATTATACTTACCAGACAATCACTTCTGTGTATAAAAGCCTGAGGGAGAAGATTACTAATTGTATCCTTGCAATGGGAATGCATTCTAACACAGTGTGCACCAAGGAGAAGGAAAAGTCCTTCGAGACAACGTTCATTCGGAAGCAGTTGGCTCTCCAGCAGTTGAAAAGGAAAGATAATCAATTATGGAGGGCACAGAGAGGCTTGCCTGAAAACTCTGTCTCAGTTCTAAGGGCGTGGATGTTTCAGAACTTTCTCCATCCGTACCCCAAGGACACAGAAAAGCACTTGCTTGCAGTAAAAAGTGGATTAACCAGAAATCAGGTATCTAATTGGTTTATCAATGCACGTGTCCGGTTGTGGAAACCGATGATCGAAGAAATGTATGCTGAAATGAGCAGAAGAAAATCCTTTCAAAATGATGAAGGATGA 1938 43.14 MAELWIQEAIVMENGFLIREMKSIGLHGFIIWFGFKQSIRAKTNRWGVWVLTRPGRNRSFNKENPDIWITMTAVDQKMSGREQDKGDGTERRTWAISLKQRVSGSPNLHLFMEIQKPSSLNLLLLLLWDVSDLLWGVFVYNASKLESDLRNALVNMASTNSVIVAGFPILLTLRESGCPATDADDHIVDQLGFLGSSPMFTAPQRNDLVDVSGGCLNLSSNAEFQDQLAGAIPIASVSPVDAKDSAFSAPQFQQLETFRTCFEHSSSNASNSSFASSLNCERDESLCNANNEWENGHFLYNQPIARDNPVRSDFQTISSMENLVQNGWMPSNTMNSKLWNELSLSLATSEPVIVGGTNFLDQYSQLTFSGATQPCLNNTELACNSMDLSLSYSYGSSPVHPSQAISGSRYLSVIQDILSQIASYPLESSDQVSHSSTTVGFVPFSSSSLETQWPKPSGDAKRSHLLTLQQLIDERYTQCLDEIHTVTSAFHAATDLDPRLHSHYTYQTITSVYKSLREKITNCILAMGMHSNTVCTKEKEKSFETTFIRKQLALQQLKRKDNQLWRAQRGLPENSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRKSFQNDEG 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3359268 3362034 - CmaCh12G006340.1 Cma12g00634 305124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00634 645 PANTHER HOMEOBOX PROTEIN ATH1 153 644 - -
Cma12g00634 645 SMART HOX_1 565 629 IPR001356 GO:0003677
Cma12g00634 645 Pfam Associated with HOX 405 521 IPR006563 -
Cma12g00634 645 Gene3D - 568 630 - -
Cma12g00634 645 CDD homeodomain 565 626 IPR001356 GO:0003677
Cma12g00634 645 SUPERFAMILY Homeodomain-like 569 634 IPR009057 -
Cma12g00634 645 ProSiteProfiles 'Homeobox' domain profile. 562 625 IPR001356 GO:0003677
Cma12g00634 645 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 153 644 - -
Cma12g00634 645 SMART prehox3 399 522 IPR006563 -
Cma12g00634 645 Pfam Homeobox KN domain 582 621 IPR008422 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00634 - - - mcha:111004597 707.597
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00100 Cma12g00634 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00634 Cma-Chr12:3359268 Cma14g00361 Cma-Chr14:1592554 2.48E-42 dispersed
Cma05g00100 Cma-Chr5:423448 Cma12g00634 Cma-Chr12:3359268 0 transposed
Cma12g00634 Cma-Chr12:3359268 Cma05g00098 Cma-Chr5:421967 1.70E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g68 . . . . Bpe02g01536 . . . Cmo05g00107 Cmo12g00574 . Cma05g00100 . Car12g00582 . Cpe07g00555 . Bhi04g00500 . . . Hepe08g1385 . Lcy13g2179 . . . . . . . . . Cone17ag0921 Cone20ag0264 . . . . Blo17g00292 . Bda01g01326 Bda13g01607 Bpe14g00258 . Bma01g00927 . . . . . Cma12g00634 . Car05g00086 Cpe11g00080 . . . . . . . . . . . . . . . Lsi08g01577 Csa02g01843 Chy03g01640 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003901 2 8 1 1 2 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36008 PF07526 POX 1.30E-15 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00634 Cma_Chr12 FPKM 0.200206 0.309746 1.384054 1.45882 1.685558 1.689423 1.891036 0.690226 0.505429 0.376812