Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00635 ATGGTGAGGAAATGTTCCCATTGTGGCAATGTGGGTCACAATTCAAGAACTTGCATCATTCAAAAAGAAAAGATTAGAGGTAAATTTAAGCTGTTTGGAGTTCATCTTGATGGAGTTTCATCTTCTTCAGCGGCGGCGACGGCGGGGGCGGCGGCAGCTGCCTTGTTGAAGAAGAGCATTAGCTTGGATTGTTTACCTTCTTCTTCTTCCTCCTCTTCTTGTGAGAAATTGTCAAATGGGTATCTCTCAGATGACCTCATTACCAAAACCCATGAAAGAAAAAAGGGTGTGCCATGGACGGAAGAAGAGCATAGAATGTTTCTTGTTGGGTTACAAAAGCTTGGAAAAGGAGATTGGAGAGGAATCTCGAGGAAATTTGTTACTACGAGAACTCCGACTCAAGTGGCTAGCCATGCACAAAAGTACTTTCTTCGACTCAATAGTCTCGACAAAAGAAAACACCGCCGCCCGAGCTTATTCGATGTAGCTACAATGGACAAATTCAGAGTGCAAGTGGTGAAGGTCAACAATTCCAAGCCAAGTAGCCTGCCTCCATCCATTTCCTTTGGGATCCCATCAAATTCTACTCCAATTCATAATCATGTTCATCAAAGTTTATTGCCCATTTGGTTTGGTTATGAAGATCATAAGGCATTCAAATTCCTTGAGAACCCCATCAAATGTTCGAACTCAAGCAGCCATTTTCATGGGAAACAGAAGACAGAGAGCCATCATCAAGCTCCTGATTTGCAGCTGAGTTTGTCCACTCCAAAGCCAGTAGAGCAAGCTGAGCAGCAGCAGCAGCAGCCGCATTGCTGCAGAAATATACGCATTAATGGAGCCATTTCAGTGACGTGA 858 43.94 MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVSSSSAAATAGAAAAALLKKSISLDCLPSSSSSSSCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMFLVGLQKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATMDKFRVQVVKVNNSKPSSLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHKAFKFLENPIKCSNSSSHFHGKQKTESHHQAPDLQLSLSTPKPVEQAEQQQQQPHCCRNIRINGAISVT 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3372350 3373944 + CmaCh12G006350.1 Cma12g00635 305125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00635 285 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Cma12g00635 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
Cma12g00635 285 SMART sant 95 145 IPR001005 -
Cma12g00635 285 CDD SANT 98 143 IPR001005 -
Cma12g00635 285 Gene3D - 97 149 - -
Cma12g00635 285 SUPERFAMILY Homeodomain-like 92 148 IPR009057 -
Cma12g00635 285 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 270 - -
Cma12g00635 285 PANTHER TRANSCRIPTION FACTOR KUA1 1 270 - -
Cma12g00635 285 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Cma12g00635 285 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Cma12g00635 285 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 94 145 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00635 - - - mcha:111004644 302.367
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00683 Cma12g00635 CCT
Cma10g00710 Cma12g00635 CCT
Cma11g00683 Cma12g00635 ECH
Cma10g00710 Cma12g00635 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00683 Cma-Chr11:3314245 Cma12g00635 Cma-Chr12:3372350 1.30E-55 dispersed
Cma12g00635 Cma-Chr12:3372350 Cma16g01124 Cma-Chr16:8638546 1.25E-47 dispersed
Cma10g00710 Cma-Chr10:3195733 Cma12g00635 Cma-Chr12:3372350 5.67E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g70 . . . . . . . . . Cmo12g00575 . . . Car12g00583 Sed08g1764 Cpe07g00556 . Bhi04g00508 Tan02g1642 Cmetu03g2033 . Hepe08g1387 . Lcy13g2180 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00635 . . . . . . . . . . . . . . . . . . Lsi08g01578 Csa02g01841 . .
Vvi11g200 Blo01g00544 . . . Bpe01g00587 . Bma07g00530 Bma11g00573 Cmo10g00736 Cmo11g00693 . Cma12g00635 . Car12g00583 Sed08g0864 Cpe04g01064 Cpe18g00365 Bhi02g01907 Tan09g1159 Cmetu02g0606 . . . . . . . . . . . . . Cone4ag0789 Cone7ag0734 Lsi06g00266 . . Cme02g00226 . Blo14g00543 . . Bpe08g00515 . Bma01g00230 . . . Cmo12g00575 Cma10g00710 Cma11g00683 Car10g00639 Car11g00566 . . . . . . . . . Cla03g01508 Cam03g1586 Cec03g1629 Cco03g1623 Clacu03g1609 Cmu03g2164 Cre03g1839 . Csa01g02912 Chy02g01207 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001505 1 4 1 4 4 2 3 2 2 1 2 2 3 2 2 3 2 4 3 2 2 3 2 2 2 2 2 4 2 2 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36009 PF00249 Myb_DNA-binding 2.40E-11 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00635 Cma_Chr12 FPKM 3.821076 5.261871 0.0 0.0 14.957972 13.177387 11.83136 0.391922 0.265714 0.139976