Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00640 ATGCTGTTCTTCGAGGATTTGTGGCAGATGCTCTGGTTTGAAGGTTTCCAAGATCAAACTCGACTTCTCTCTGAGTCCATTGTACGGACCGTATCCGAATCAATGGGCAATTCATCCTGTAGTGTATCTGAGTTAGAACTCTGTAGAGATGATTCGGCAGCGCTTAATTTCAAATTAATCGCCATTGCCTCGATTCTCACATCGGGAGTTTTCGGAATTGCCATTCCGTTATTCGGCAGACATCGCCGGTTTCTCAAAACGGATGGCAATCTCTTTGTAGCGACTAAGGCGTTTGCTGCCGGCGTGATTCTTGCGACGGCGTTTGTTCATATGCTTCCCGATGGATCGAAAGCTCTCTCCGATCCGTGCTTGCCGGAATTTCCCTGGTCGAAATTCCCTTTCTCTGGATTCTTCGCGATGATGGCGTCGCTTTTGACGCTCCTTGTCGATTTCGTCGGAACTCAGTATTACGAGAGGAAACAGGGGCAGATTCGATTGAAAGAAGAAACGAATCGGGTCGGGTCGGGTTTGGATCACGGGTTGGAGGCTGGGATTCTCCCGGCCGCCGATTCGAACGTGAAAGTGTTCGGCGAAGAGGATGGCGGCGGGATGCACATCGTCGGAATGCATGCACACGCCGCGCAACACCGCCATAGTCATCCGCAGGGGAAAGAGGCATGTGACGGGCACGTGACACTCCATGATCATGCCCATGGTCATTCTCATGGGCTCGACGGCGACGATGACGAAAGCGGTGTACGACATGTCGTTGTTTCCCAGATTTTGGAGCTTGGAATAGTGTCGCATTCAGTGATAATTGGGCTGTCTCTGGGAGTGTCCCACAGCCCATGTACTATAAGACCCTTAATTGCAGCTCTCTCGTTCCATCAATTCTTTGAAGGCTTTGCTCTTGGTGGCTGCATCTCCCAGGCTCAGTTCAACACCCTCTCAACCTCCCTCATGGCTGTGTTCTTCGCCGCCACCACGCCCGTTGGGATTGCCATCGGTGCGGCGATCTCCTCCACCTACAACCCGAACAGCACCGGAGCGTTGGTTGCCGAAGGCATTTTGGACTCTCTATCAGCTGGGATTCTGGTGTATATGGCTTTGGTTGATTTGATCGCTGCTGACTTTCTTAGCAAGAGAATGAGCTGCAATTTTCGACTCCAAATTGTTTCGTATTGTACACTCTTTCTCGGTGCGGGATTGATGTCGTTGCTCGCGCTATGGGCTTGA 1236 51.46 MLFFEDLWQMLWFEGFQDQTRLLSESIVRTVSESMGNSSCSVSELELCRDDSAALNFKLIAIASILTSGVFGIAIPLFGRHRRFLKTDGNLFVATKAFAAGVILATAFVHMLPDGSKALSDPCLPEFPWSKFPFSGFFAMMASLLTLLVDFVGTQYYERKQGQIRLKEETNRVGSGLDHGLEAGILPAADSNVKVFGEEDGGGMHIVGMHAHAAQHRHSHPQGKEACDGHVTLHDHAHGHSHGLDGDDDESGVRHVVVSQILELGIVSHSVIIGLSLGVSHSPCTIRPLIAALSFHQFFEGFALGGCISQAQFNTLSTSLMAVFFAATTPVGIAIGAAISSTYNPNSTGALVAEGILDSLSAGILVYMALVDLIAADFLSKRMSCNFRLQIVSYCTLFLGAGLMSLLALWA 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3405585 3407788 - CmaCh12G006400.1 Cma12g00640 305130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00640 411 PANTHER ZINC/IRON TRANSPORTER 35 411 - -
Cma12g00640 411 TIGRFAM zip: ZIP zinc/iron transport family 40 411 IPR004698 GO:0005385|GO:0016021|GO:0071577
Cma12g00640 411 PANTHER ZIP ZINC/IRON TRANSPORT FAMILY PROTEIN 35 411 - -
Cma12g00640 411 Pfam ZIP Zinc transporter 56 408 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00735 Cma-Chr2:4458402 Cma12g00640 Cma-Chr12:3405585 2.28E-74 dispersed
Cma12g00640 Cma-Chr12:3405585 Cma18g00546 Cma-Chr18:3514491 1.52E-64 dispersed
Cma09g01000 Cma-Chr9:5100852 Cma12g00640 Cma-Chr12:3405585 1.81E-11 transposed
Cma12g00640 Cma-Chr12:3405585 Cma05g00093 Cma-Chr5:397954 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00640 K14709 - csv:101218224 714.146