Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00651 ATGCCTCCCTCCACGCATCAACCTGATGATGGGTTTCCCTTGAACACCACGGCCGTCGCCATTGACAAGGATAAGAATAGCCAACACGCCGTACAGTGGGCTATTGATCATCTCGTCATAAGCAACCCGCTTATCATTCTCATCCACGTTAGGCATAAAACCAATCAACATCAGGGCGCAAGCGATTCTGAAAATGGCGAAATTGATGCGCAGCAGCTGTTTGTTCCCTATCGTGGATATTGTGCGCGTAAAGGGGTTCAGCTGAAGGAGGTTGTTCTTGACGATACCGATACTCCCAAAGCACTCGTCGACTACGTTCACAAGAATTGCATCAACAATTTTGTAGTTGGAGCTTCAACAAGGAGCGCTATAGCAAGGAAATTTAAAGGTCCTGATATTCCGACCAGCATAATAAAAACTGCCCCGGACTTTTGTTCTGTATATGTAATATCAAAGGGGAAGATAATATCTGCCAGGGCTGCTCTTCGGCCAGTGGCGAATACTGCCATGCCACCAAGACAACCATCACCGCTTGGAATGCAGCCAAATAATCAACCAGACAGCAACAATGAACAAGAAAATGGAGCCAAAGGGCAACCAGCAAGGGAAGGTTGGAAGACTGCAGCTACAGAGAGAATGCTCAATGAAAGGAATGGTGCAAAGCCGGCAAAAGCGTTGACTCGTGAGAGGCCAAAAACTTCTCCGGCTAATATAACATTGGAAAATATTGAGGCTCCAAATCGAGGTTCTAGGCCTTCATTTAGTCGTGATTCGGTCTCTGACGAACATATGTTGACAGCACAGATTCCTTTTGGATCAATGGATGCGATTGGTCAAAATTTAGATTTTAGTTCTAGCTCAGTTGGTTCAATGGACTCTGCTTCTGCACAATCGACTCGAGAACTAGAGGCCGAGATGAAAAGATTGAAGCTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGCAAAGAGGCAATCTCAGCCAAGAACAAGGCAAGAGAACTTAGTCAGTGGAAGCAAGACGAGGCACGTAAGTTTGAAGAAGTCAGACTAGCTGAAGAGGCTGCTCTTGCTATTGCGGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCGGAGGCAGCGCAAAAGCTAGCCGAAAGAGAAGCCCAGAGAAGAAAACAGGCTGAAATGAAGGCCAGAAAAGAGACCGAAGAGAAAAAACGAGCATTGAATGCTCTAGCACAGAACGACGTCCGTTATAGAAAATACACCATAGAGGAGATAGAGGAATCTACTGAAATGTTCTCTGAAAAATTGAAGATTGGAGAAGGTGGATATGGTCCTGTTTATGGAGGCAAACTTGATCATACCGCCGTTGCGATTAAAGTTTTAAGACCCGACGCTGCTCAAGGACGGAAGCAATTCCAACAAGAGGTGGAGGTCCTCTGTTGTATTAGACATCCAAACATGGTGCTCCTTCTTGGGGCATGCCCTGAGTATGGTTGCTTGGTGTATGAGTACATGCATAATGGGAGCTTAGAAGACAGACTCTTCCGGAGAGGGAATACTCCTCCAATCTCTTGGAGACGACGATTCAAGATAGCTGCTGAAATCGCAACCGCACTCCTTTTTCTTCACCAAGCAAAGCCAGAGCCACTGGTGCATAGGGACCTTAAACCAGCCAACATTCTCTTGGACCGCAATTACGTGAGCAAAATCAGTGATGTTGGCCTGGCTCGGTTAGTCCCTCCTTCGGTTGCTGATCAAGTCACCCAATATCATCTGACTTCAGCAGCTGGCACGTTTTGTTACATCGATCCTGAGTACCAACAAACAGGACAGTTAACAACAAAATCAGATATTTACTCTTTTGGAATAATGTTACTTCAAATCATTACTGCCAAACCTCCAATGGGTCTAGCTCACCATGTTCAAAGGGCTATCGAAAAAGAGCGGTTCAATGAGATGCTGGATCCTACAATTTCAGATTGTCCATTGGAGGAGGCTATACATTTTGCAGAACTGGCTTTGAAGTGCGCTGAACTGAGGAAGAGAGACAGACCAGATCTTGGAACTGTTATAGTTCCAGAGCTCAACAGGTTAAGAGATCTCGGGAGGAGTTCTGACAAACGCGATGGTCGGAATCAGTTTCCACGCTCTGCCGCATCGAGTTCCAGTTTGAGGGCGCAGTCATCGAATGAGGTCCACAACTTACATATAATTTAG 2220 45.9 MPPSTHQPDDGFPLNTTAVAIDKDKNSQHAVQWAIDHLVISNPLIILIHVRHKTNQHQGASDSENGEIDAQQLFVPYRGYCARKGVQLKEVVLDDTDTPKALVDYVHKNCINNFVVGASTRSAIARKFKGPDIPTSIIKTAPDFCSVYVISKGKIISARAALRPVANTAMPPRQPSPLGMQPNNQPDSNNEQENGAKGQPAREGWKTAATERMLNERNGAKPAKALTRERPKTSPANITLENIEAPNRGSRPSFSRDSVSDEHMLTAQIPFGSMDAIGQNLDFSSSSVGSMDSASAQSTRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAIAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEMKARKETEEKKRALNALAQNDVRYRKYTIEEIEESTEMFSEKLKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLFRRGNTPPISWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADQVTQYHLTSAAGTFCYIDPEYQQTGQLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKERFNEMLDPTISDCPLEEAIHFAELALKCAELRKRDRPDLGTVIVPELNRLRDLGRSSDKRDGRNQFPRSAASSSSLRAQSSNEVHNLHII 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3436563 3440293 - CmaCh12G006510.1 Cma12g00651 305141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00651 739 MobiDBLite consensus disorder prediction 180 196 - -
Cma12g00651 739 Gene3D Phosphorylase Kinase; domain 1 400 505 - -
Cma12g00651 739 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 728 - -
Cma12g00651 739 Pfam Protein tyrosine and serine/threonine kinase 437 691 IPR001245 GO:0004672|GO:0006468
Cma12g00651 739 MobiDBLite consensus disorder prediction 715 739 - -
Cma12g00651 739 MobiDBLite consensus disorder prediction 168 257 - -
Cma12g00651 739 Gene3D HUPs 10 150 IPR014729 -
Cma12g00651 739 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 131 - -
Cma12g00651 739 ProSiteProfiles Protein kinase domain profile. 433 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00651 739 SUPERFAMILY Protein kinase-like (PK-like) 416 691 IPR011009 -
Cma12g00651 739 SMART serkin_6 433 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00651 739 MobiDBLite consensus disorder prediction 232 257 - -
Cma12g00651 739 Coils Coil 299 319 - -
Cma12g00651 739 PANTHER OS02G0152300 PROTEIN 16 728 - -
Cma12g00651 739 CDD STKc_IRAK 439 699 - -
Cma12g00651 739 MobiDBLite consensus disorder prediction 702 739 - -
Cma12g00651 739 Coils Coil 359 410 - -
Cma12g00651 739 Gene3D Transferase(Phosphotransferase) domain 1 506 717 - -
Cma12g00651 739 CDD STK_N 16 153 - -
Cma12g00651 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00422 Cma12g00651 CCT
Cma05g00422 Cma12g00651 ECH
Cma05g01403 Cma12g00651 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00651 Cma-Chr12:3436563 Cma09g00539 Cma-Chr9:2408437 0 dispersed
Cma19g00714 Cma-Chr19:7264273 Cma12g00651 Cma-Chr12:3436563 0 dispersed
Cma12g00651 Cma-Chr12:3436563 Cma05g00422 Cma-Chr5:1899419 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68959 PF07714 PK_Tyr_Ser-Thr 1.80E-41 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00651 - - csv:101203326 1203.35