Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00652 ATGGAGGAAATGTTCCGGGCAGTCGTCGTGCCATTTAGAGTAGGTAATCCCGACATGGCAACTCCCATGGATATCACTAGACTCACTGCTGGTTTGTTATCTGATTCTGTGGCTAAGGCTTCTGACCACTTGACTGAAGTAGGTTCTGATGATTGTAAGAGTTCTAATGGGGAGGAAGAGGTTTCGGTTATGAACGATGACAAGTGCGAAGGAGTTTCGTTGTCAGTCGTGTTGTCTCAAAATAATAGCAATTGGGTTGCAGCTGATGAGACGATATCCCATGTAAGTGAGGAAGATGATTCTTTCTCTTTAGAGGGTATATATGATAGCTCGTGTTCGCATTCGGTAGTTAGTGAGACTAGCAGCATTTGTGGTGATGACTTTTTAGGTTCTGAGGTGTCTTATTTTGAAGCATTTGGTTCCAAGGATGTTAGCAGTGTCGAGATTGCAGCTACAGCCAATGTTGAAAGTCTCGAGACCCCGATTGCAAGTTCTTCTTCTGCAGGAGTTAGCCTTGAAGAAGATATTGGAGATGGGTTAGGCATCGATGCATGTAACATGGTTCTCCAGCTTCCTCTTGAGAAAAGAGCAAACGAACCGGTTGGTCGAAGTGTTTTTGAGGTCGATTGTGTTCCTCTTTGGGGATTTATGTCCGTTTGTGGAAGAAGACCTGAAATGGAAGATGCAGCCACAGCTGTACCGAGGTTTTCAGAACTTCCTGTCCAAATGCTTATTGGCGACCGAGTTCTTGATGGCTCGAGCAAGGCTATAGCTCACCAAACTGTTCATTTTTTTGGAGTTTATGATGGTCATGGTGGCTCTCAGGTTGCGGATTTTTGTCATGAACGTATGCATTTGGCTTTGTCTGAGGAGATAGAACTTGCTAAGCAAGACATAGCTGCTGGCAATATGAAGGATAGTTGCCAAGAGCTATGGAGAAAGGCATTCACCAAATGTTTTCTAAAAGTTGATGCTGAAATTGGAGGGAAACCTGGCGCTGAGCCTGTTGCACCCGAAACTGTAGGATCCACTGCTGTTGTTGCAATCATCTGTGCCTCTCACATTATTGTTGCAAACTGTGGCGACTCGAGAGCAGTTCTTTGTCGTGGGAAGGAGCCTATAGCGTTGTCTGTGGATCACAAACCAAACAGAGAAGATGAATATGACAGGATTGAAGCTGCTGGAGGAAAGGTCATACAGTGGAACGGGTACCGTGTTTTTGGTGTTCTTGCAATGTCGAGATCCATCGGTGATAGATACTTGAAACCATGGATCATCCCGGAGCCAGAAGTTATGTTCCTCCCTCGAGCGAAAGACGACGAATGCCTCGTTCTAGCCAGCGATGGTTTGTGGGATGTGATGACGAATGAAGAGGTATGCGACCTGGCTCGGAGACGAATCCTACTCTGGCACAAGAAGAACGGCGTCCCTTCGCCTTCTGAGAGGGGTGTGGGGATCGATCCTGCAGCCCAAGCTGCAGCCGAATACCTCTCGAACCGAGCACTTCAAAAGGGCAGCAAAGACAACATCACAGTAATTGTGATTGATTTGAAAGCTCAAAGGAAGAAGTTCAAGGCCAAATCATAA 1587 46.19 MEEMFRAVVVPFRVGNPDMATPMDITRLTAGLLSDSVAKASDHLTEVGSDDCKSSNGEEEVSVMNDDKCEGVSLSVVLSQNNSNWVAADETISHVSEEDDSFSLEGIYDSSCSHSVVSETSSICGDDFLGSEVSYFEAFGSKDVSSVEIAATANVESLETPIASSSSAGVSLEEDIGDGLGIDACNMVLQLPLEKRANEPVGRSVFEVDCVPLWGFMSVCGRRPEMEDAATAVPRFSELPVQMLIGDRVLDGSSKAIAHQTVHFFGVYDGHGGSQVADFCHERMHLALSEEIELAKQDIAAGNMKDSCQELWRKAFTKCFLKVDAEIGGKPGAEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKEPIALSVDHKPNREDEYDRIEAAGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPEPEVMFLPRAKDDECLVLASDGLWDVMTNEEVCDLARRRILLWHKKNGVPSPSERGVGIDPAAQAAAEYLSNRALQKGSKDNITVIVIDLKAQRKKFKAKS 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3443551 3448123 + CmaCh12G006520.1 Cma12g00652 305142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00652 528 ProSitePatterns PPM-type phosphatase domain signature. 264 272 IPR000222 GO:0043169
Cma12g00652 528 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 110 527 - -
Cma12g00652 528 SMART PP2C_4 203 515 IPR001932 -
Cma12g00652 528 ProSiteProfiles PPM-type phosphatase domain profile. 213 517 IPR001932 -
Cma12g00652 528 SUPERFAMILY PP2C-like 210 518 IPR036457 -
Cma12g00652 528 Pfam Protein phosphatase 2C 241 510 IPR001932 -
Cma12g00652 528 CDD PP2Cc 215 517 IPR001932 -
Cma12g00652 528 Gene3D - 200 527 IPR036457 -
Cma12g00652 528 PANTHER ALPHABET, ISOFORM E-RELATED 110 527 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00420 Cma12g00652 CCT
Cma05g00420 Cma12g00652 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00055 Cma-Chr1:225285 Cma12g00652 Cma-Chr12:3443551 0 dispersed
Cma10g00665 Cma-Chr10:3025746 Cma12g00652 Cma-Chr12:3443551 7.41E-87 dispersed
Cma12g00652 Cma-Chr12:3443551 Cma14g01254 Cma-Chr14:9939265 5.68E-164 dispersed
Cma02g01782 Cma-Chr2:9923939 Cma12g00652 Cma-Chr12:3443551 2.35E-22 transposed
Cma12g00652 Cma-Chr12:3443551 Cma05g00420 Cma-Chr5:1893659 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00652 K14497 - csv:101207918 888.256