Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00654 ATGTCGTCTAGGTATTGTGATGGTAGAGGAGAGTCTGATGGGGGTCGGTTTCTTGAGGAAATTGAGGCAATAAGTAAGGCTCTGTACTTACACAAGGGCCACACAAATTCGAGTTTCGATCTTCCTGATCGACGGTTTGAATCAAATGAAGAAGAATTATTGGTGAATGAAACTAGAAGGTCGTCATCATCATCATCTTCATGGAACTGGAAGAAATCTTTGAAAGCTCTTACTCATATTCGACATCGAAAGTTCAATTGTGTGTTTTTTCTCAAGGTTCATTCCATTGAAGGGTTACCCTCGAGTTTTAATGGCTATAGTTTACATGTGCATTGGAAAAGGAAGGATGAGGTTTTGCATACTCGCCCGTCTAAGGTTTTCCAAGGCGTGGCGGAATTTGATGAGACTTTGATTCATAAAACTTCGATATCTGGAGGGAGAAGTTTGGCTAACAACTCGGCGAAGTATGATCAAAAGCTTTACTTGGTCTATGTTTCTATGGTTGGAGCGCCACGGCTTGAGTTTGGGAAGCATTGGATTGACCTGACGAGGATTTTGCCTCTTACATTGGAGGAGCTTGAAGGGGATAAATGTTCTGGGAACTGGTCAACCAGCTTTCGACTTGCTGGCAATGCACGAGGTGCTAGTCTAAATGTCAGCTTTAGTTTTCTGGTAACTAAGGATGATCCGATGAAATTGAGCGGTCCCGAAAACGTTGTTGAACTCTTGAAGTTATTGCATGATAGGTCAAGGCTTTCTACCTATGATGCACCCTTTACTTCAAGTAATTTAAATAGGTTTCGGGTTGATACGGGAATTTTCGATGAACTAAATCCGAAATTGGAGCTCTCCAAGTCGATAAGCGTTTTGTATAGTAAGATGGATGAGGTAGATCATTCAGGTTCTGAGTTTGCCAAGCAGTTTGAAGTAAAAACTAATGAGGAACAAAAGTCTGCTGAAGTAATTGGTGGAGATAGTTATGAGAGTTTTAAGTTTTCCATTGTTGAATGTGGAATAGAATTAGCTGCTCAGACTATTGAGGGATCGAAAATTGAAATGGTTTCATTGGACAAGGTCGTAGGAGACGACAAAGTTGCTACCGAATTTAAGTCGAGCAACACGTTGAAGGATGCAGAGTGCGATATTCATGTAGATGACTCGATAAGGGATGAATTCGAATGTGAAGAGAGTAAGCTAAAACTAAAAGTAAAAGAAGTTTCTCCAGAAGAGTTGAGTTCAGATTCTGATCTCAAGAACTCTCCCTCGACCGTTCCCTCGACCGTTGGTGAACTTCTCGAAGAGGGAAACGATATCGATGCCGAGGAAGATTGTACGAGAAAATCTCTTAGCCTGGATGAGTCTTACAAATCAGTGGCTAGTGATTTTCTAAAGCTGCTGGGGTTGGAGAATGGTTCGGCGAGGTTTTCAGATCCTGATATATCGTCTCCCAGAGAGCGTTTATTGAGGGAATTCGAGGAGGAGTCCCTACTTTTTGGTAATCCGTTATTGGACTTTTCGGGTACAGAAGAGTGGCAGGATAACGAAAACGTCGATATGCTGGAGTCTGCTTCTGGGAATTTTGATTTTTCTATTTGTGTTGCTGAAGAAGGACAGGAGGGGCATCAGTCCTTGAGAACCAGAAGGAACGCCGAAATTCTTGAAAACTTGGAGACCGAAGTTCTAATGCAAGAATGGGGCTTAGACGAGAGAGATTTCGAGCATTCTCCACATTATTGTTCAAGTGGATTTGGGAGTCCTATTGAGTTGCCCCCAGAAGACGAGCCACCTAAGTTACCTTCACTCGGAGATGGGTTCGGAGCATTCCTTAAGATGAACAGCGGATTTTTACGGCTCATGAGTCCTTGGCTCTCTCAAAAGACTAGCATTGGACAGAGCTTAGCCATTCAATGTTCTGATCCTGTTGTTCTACCTAATGAAATGGGTCGTGATATCATGGAGATATCACAAAATTTAGCAATGGCAGGAACCAAAAACCTTTCTATACTCACAAAAAAGTTGATGCCTTTGGATGATATCACTGGGAAAACTCTCCACCAAATGATATCAAGTTGGGATTCGTGTGGTTCGGTTTCATGTTATCAAAGGAACGACCCTGAAGGATTGCCATCGTACCCGAACAATAGTAGTCTTCGATCTCTTCTCGATTTCGAGATGCACCAAGAACTCGTGTTGCCTGATGATCTAGCTTTTCTAGCAATGGGCAAGATTGAAACTCTCTTAATAGAAGGATTAAGAATACAATCTGGCTTTACATATGATGAGACACCACGAAGAATTGGTGCCCGCCCGTTTCATTGCGTGTCAGCCTGTGGACCGAGACGTCCCAATCGGGATGGTTCTTGTAGCTCTGAAGGATTGAAGGAACTGCAGTTTATCGATCGCCCTGAAACAGCTAATGATGTTGTTGGGTTGATGGATCTTTGTATAACACTGAAGAACTGGTTAAAGCTTGATGCTGGTAACATTAATGATGATGATGATCCAAATGGTCAGCATATTATGAAGACTCTTGTGGCTCATGGTGCTAACTATGCAGACATAGTTGAAAGGCTATCAGTTAACAAGTCCGGGGTATCCAGCAAAGAGATGGGCTTGTTTAAGAACAAGCTTGTGGTGGCTCTCATGGTGCAACTTCGAGATCACTTACGAGACTACGAACCGGTGGGCTGCCCAATGATGTGCATAATGGAGGTTGAGAGGTTCTTTATCGACACAGCTCGTGACACCATCAGTGAAATGAGCTGCGTCGACAAGAAGAACGAGACATTGCAAGCACAAGGACACCTTGTTCATGCATTTAAACTCGATGATATTCATCTTTTGGGTGTAAATTCTGAGCCTAATAGGATGCAATTCTGGGGAACCACGATGCAGCAGCAATCTGGATCGCGTTGGCTGCTTTCAAGTGGATTGGGTAGAAACTTCAAGCTCCCGATATCGAAGTCGAAAGCAATCGTTACATTTTCGTCAAAAGCTCCGACTGGTGATATCCTGTGGAGCATTTCCTCTGATATACATGGTGAGGGAATGATATCTGCTTCAACAGCTTCAATTTCATATAAAAGAAACTTCGATGTCGTTATCCCGATTCGTAGTTGA 3120 42.85 MSSRYCDGRGESDGGRFLEEIEAISKALYLHKGHTNSSFDLPDRRFESNEEELLVNETRRSSSSSSSWNWKKSLKALTHIRHRKFNCVFFLKVHSIEGLPSSFNGYSLHVHWKRKDEVLHTRPSKVFQGVAEFDETLIHKTSISGGRSLANNSAKYDQKLYLVYVSMVGAPRLEFGKHWIDLTRILPLTLEELEGDKCSGNWSTSFRLAGNARGASLNVSFSFLVTKDDPMKLSGPENVVELLKLLHDRSRLSTYDAPFTSSNLNRFRVDTGIFDELNPKLELSKSISVLYSKMDEVDHSGSEFAKQFEVKTNEEQKSAEVIGGDSYESFKFSIVECGIELAAQTIEGSKIEMVSLDKVVGDDKVATEFKSSNTLKDAECDIHVDDSIRDEFECEESKLKLKVKEVSPEELSSDSDLKNSPSTVPSTVGELLEEGNDIDAEEDCTRKSLSLDESYKSVASDFLKLLGLENGSARFSDPDISSPRERLLREFEEESLLFGNPLLDFSGTEEWQDNENVDMLESASGNFDFSICVAEEGQEGHQSLRTRRNAEILENLETEVLMQEWGLDERDFEHSPHYCSSGFGSPIELPPEDEPPKLPSLGDGFGAFLKMNSGFLRLMSPWLSQKTSIGQSLAIQCSDPVVLPNEMGRDIMEISQNLAMAGTKNLSILTKKLMPLDDITGKTLHQMISSWDSCGSVSCYQRNDPEGLPSYPNNSSLRSLLDFEMHQELVLPDDLAFLAMGKIETLLIEGLRIQSGFTYDETPRRIGARPFHCVSACGPRRPNRDGSCSSEGLKELQFIDRPETANDVVGLMDLCITLKNWLKLDAGNINDDDDPNGQHIMKTLVAHGANYADIVERLSVNKSGVSSKEMGLFKNKLVVALMVQLRDHLRDYEPVGCPMMCIMEVERFFIDTARDTISEMSCVDKKNETLQAQGHLVHAFKLDDIHLLGVNSEPNRMQFWGTTMQQQSGSRWLLSSGLGRNFKLPISKSKAIVTFSSKAPTGDILWSISSDIHGEGMISASTASISYKRNFDVVIPIRS 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3464606 3467725 + CmaCh12G006540.1 Cma12g00654 305144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00654 1039 MobiDBLite consensus disorder prediction 410 439 - -
Cma12g00654 1039 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 7 1036 IPR039614 -
Cma12g00654 1039 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 2 7 1036 IPR039823 -
Cma12g00654 1039 MobiDBLite consensus disorder prediction 413 429 - -
Cma12g00654 1039 ProSiteProfiles C2 NT-type domain profile. 77 225 IPR019448 -
Cma12g00654 1039 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 82 228 IPR019448 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00654 - - - cmax:111496096 2018.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00758 Cma-Chr10:3453899 Cma12g00654 Cma-Chr12:3464606 8.81E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g122 . Blo12g01021 Bda01g00632 Bda03g00135 . Bpe02g00500 . Bma01g02204 . Cmo12g00593 . . . . Sed08g1787 Cpe07g00569 . Bhi04g01490 Tan02g1608 Cmetu03g1951 . Hepe08g1409 . Lcy13g2199 . . . . . . . Cone4ag1683 Cone7ag1600 . . Lsi04g02237 . . . . . . . . Bpe04g00118 . . . . . . Cma12g00654 . . . . . . . . . . . Cla08g01002 . . Cco08g1152 Clacu08g1153 . Cre08g0938 Lsi08g00853 . Chy03g00671 .
Vvi11g132 . . . . . . . . . . . Cma12g00654 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda09g01074 . . . . . . Cmo12g00593 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009716 2 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00654 Cma_Chr12 FPKM 14.005128 15.921612 5.107408 5.121202 6.882547 6.166914 6.446451 5.576505 5.42871 5.814393