Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00657 ATGGCAATCGATCCAAGGAACACCATGGGCGCCTTCGAACCAGATCAAGACCCATACGACAGTTCCATCAACGCCAACATTCTCAATTTCGCCAACGACCAAAACCCAACTCTCGACGACTTGCAGTCCACAGCAGAGCAGCCAGTGGCGGCGGCGCGTGACTCCTACGGCGGCCGAACAAGCGCTTTTCAGAACATGGGTATGGTGGAATTGTTGACACATTTCAGTTTCGGTGGACAATATGATTCAGAAGCAGGCCCCTCAAACGCCGGCGAAGCAGCAAGCAATTTTGAAGAAGATGATGATACTCAAATACCCAGTGAAGTCGAATCGAAATTGCTGGCAATTTGGCCCGTAACTCCGGTGCCATTTCTGTGCAGTTGCTGCCAAGTTCTAAGAGAATTTCTTCATAGCAATGGGGTGAACAGCAGAAAACTGGAGATTCATGGTCGACTTGGAATGATCTGTCATGCAATTCTGGAACATAAACCGATTGTTAACGTGGATAATATAAGTCCTCAGTATCAAATGTTCGATTTTTGCGACAAAAGCTTTGAGGAGATCAAGCAGTTCTTGCTGCAGTATTGTTTGAAGCAAATTTTGGAGGATTATAACATGATTCCAGATCCGATGTCGAATTTCTACGACGCGCTTTGTGTCGGGATTGACTGGTTTGAAAATCTCAATACTACTGATGCGTTCTTTCAACAGTCTCCTGATAATTCTGAAGATGAAGATATAGATCAGCCCGTCCCTGAGTTCCAAAATGATGCGCCTGAGCCGCAAGGCCAACCATCTAGACGGCCCTCGCTTGCAGCACAGAGGCAGAGAACAGGGAGAATGACGGTGAACGATGTGTGGGAGTATCTTCATCTTCCGATATCAGAAGCATCGAAGAAGTTGAATGTGTGCAATACGGTGTTGAAGAAGATATGTCGGCGGAGTGGTCTTAGCCGTTGGCCTTACAGAAAGATACGAAGTTACGAGAGGCGAATAGCAGCGCTGAAAACCACAATGAATTCCAATTATGGAGACACCAAAGCCCGAGCCCGAGCCGAAGCTGAGATCCAAAGGAGGTCAAATATTTGGCTGTTTTTTTTTCCCTCCTTTTGCTTTCTCTCCTCCCTTCTTCCTCGCCGTGTTTCTCGATCGGTTGTTCATTTTTCTCTCTATCAATCTTTCACTCTCTATCGCACTTGTGGCGCTTCCAATTCGAAGGTGAGAGCTGTCGGCCATGGACGGAGGTGCTCCCTACAATCCACGTACTGTGGAAGAGGTGTTCATGGATTTCAAGGGCCGGAGAGCTGTTCTGCTTTTCTGGTTGCAGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTACGGGTTTCCTAGTGAGCAATGGGAAGTCAATTTACCTGCCGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAAGACTGGCTATCCTTGGTTGCTGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTTGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCCGAACCTCAAATAAAAAGTACGAAGGCAGTTCAATCAAAAGATGAGGATGAGGAAGGTTTGGATGAGGAAGACGAGGAAGAACACGGTGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCAGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAGTGGTTCCATGGGAAATGTGTAAAGATCACTCCGGCAAGGGCAGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAAAGAATCCGACCCTGA 1992 45.33 MAIDPRNTMGAFEPDQDPYDSSINANILNFANDQNPTLDDLQSTAEQPVAAARDSYGGRTSAFQNMGMVELLTHFSFGGQYDSEAGPSNAGEAASNFEEDDDTQIPSEVESKLLAIWPVTPVPFLCSCCQVLREFLHSNGVNSRKLEIHGRLGMICHAILEHKPIVNVDNISPQYQMFDFCDKSFEEIKQFLLQYCLKQILEDYNMIPDPMSNFYDALCVGIDWFENLNTTDAFFQQSPDNSEDEDIDQPVPEFQNDAPEPQGQPSRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCNTVLKKICRRSGLSRWPYRKIRSYERRIAALKTTMNSNYGDTKARARAEAEIQRRSNIWLFFFPSFCFLSSLLPRRVSRSVVHFSLYQSFTLYRTCGASNSKVRAVGHGRRCSLQSTYCGRGVHGFQGPESCSAFLVADVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKSTKAVQSKDEDEEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3506288 3511660 + CmaCh12G006570.1 Cma12g00657 305147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00657 663 Pfam Alfin 440 549 IPR021998 GO:0006355|GO:0042393
Cma12g00657 663 PANTHER CPG BINDING PROTEIN 440 663 IPR045104 GO:0006355|GO:0042393
Cma12g00657 663 MobiDBLite consensus disorder prediction 555 603 - -
Cma12g00657 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 600 658 IPR013083 -
Cma12g00657 663 ProSitePatterns Zinc finger PHD-type signature. 610 656 IPR019786 -
Cma12g00657 663 SUPERFAMILY FYVE/PHD zinc finger 599 660 IPR011011 -
Cma12g00657 663 SMART PHD_3 609 657 IPR001965 -
Cma12g00657 663 Pfam RWP-RK domain 281 327 IPR003035 -
Cma12g00657 663 MobiDBLite consensus disorder prediction 83 104 - -
Cma12g00657 663 ProSiteProfiles RWP-RK domain profile. 268 348 IPR003035 -
Cma12g00657 663 MobiDBLite consensus disorder prediction 259 278 - -
Cma12g00657 663 ProSiteProfiles Zinc finger PHD-type profile. 607 659 IPR019787 -
Cma12g00657 663 CDD PHD_AL_plant 609 659 IPR044104 -
Cma12g00657 663 MobiDBLite consensus disorder prediction 235 278 - -
Cma12g00657 663 MobiDBLite consensus disorder prediction 555 584 - -
Cma12g00657 663 Pfam PHD-finger 610 659 IPR019787 -
Cma12g00657 663 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 440 663 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00416 Cma12g00657 CCT
Cma05g00416 Cma12g00657 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00143 Cma-Chr11:765229 Cma12g00657 Cma-Chr12:3506288 7.43E-09 dispersed
Cma12g00657 Cma-Chr12:3506288 Cma05g01413 Cma-Chr5:10511813 2.44E-107 dispersed
Cma16g00528 Cma-Chr16:2695380 Cma12g00657 Cma-Chr12:3506288 1.86E-10 dispersed
Cma01g01710 Cma-Chr1:11640575 Cma12g00657 Cma-Chr12:3506288 2.00E-69 transposed
Cma12g00657 Cma-Chr12:3506288 Cma05g00416 Cma-Chr5:1869933 3.18E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36012 PF12165 Alfin 3.00E-57 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00657 - - cmax:111496477 732.25