Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00660 ATGAAGCCAAATCAGGGCATCCGCCGGGCTCTGTGGTTTATCGCAGGCTGCGTGTTGTTGGTTGCGACGGCGGGGGAGGCTCGGAATGTGAGCGTGGGGGTGGTGTTGGATATGGAGAGCTGGGTTGGGAAGATGGGGCTGAGCTGCATCCACATGTCGCTGTCGGAATTCTATCAAGCTAACCCTCACTACAACACTAGGATTGTTCTTCACCCCAAGGACTCCGCCAGCGATGTCGTTGGTGCGGCGGCGGCAGCTCTTGACCTGATAAAGAACAATAAAGTTCAAGCAATTTTGGGGCCAACCACTTCGATGCAGACCAACTTTGTGATCAAGCTCGCCCACAAAGCTCATGTCCCCATCCTTACCTTCACCGCCTCCTCCCCCCGTCTCGCCTCCTACCGCAGCCCCTACTTCTTTCGTCTCACCCAGACTGACTCTGCCCAAGTTGCCGCTATTAGCGCCCTGGTCAAAGCCTACAATTGGAGACAAGTCGTTTTGATCTACCAAGACGACGAGTTTGGAGACGGGATGTTACCGTATTTGATCGACGCATTGCAGGATGTGAATGCACGCGTCCCATATCGGAGCGTCATCGATCCAACGGCCACCGAGGATCAGATCGGGGAAGAGCTTTACAAATTGATGACAATGCCGACCAGAGTGTTCTTGGTGCACATGCAGCCGTCTCTAGCGATTCGCTTATTCGCTAAGGCCAACAAAATTGGAATGATGAGGGAAGGTTACGCTTGGATTTTGACTGACGTCATCGCGAATTTACTCGATTCCATGAGTTCCTCTGTTCTAAACTCCATGGAAGGAGCTTTGGGAGTGAAGACATATGTCCCAAAATCAATGGAGCTCGCCCGTTTCAAAATTAAATGGAAACGGGAATTCGTAATGGAAAATTCTGTCCTCACCGATCCACATTTAGACATCTTTGGACTGTGGGCCTATGATGCAGCTCGAGCACTAGCAATGGCAATTGAGAAAACAGGGGCCAAAAACTTCACATTCGAAAACCCGAAAGGATCTGAAAATCTAACAGATCTTGAAACGTTGGGGGTTTCTCGAAATGGGGAGAAAATTGTGGAGGGGTTGTCGAAGACGCAGTTCATGGGGCTGACTGGAAACTACGAGATCGTGAATGGGCAGCTGCAATCGGCGGCATTTGAGATTGTGAATGTGAACAGTAATGGAGGAAACAGAGTTGGGTTTTGGAATCCTGAAAAGGGGTTGTTGGGTAACAATATGATAGTGATCTGGCCGGGGACTACGGAAGCGGTGCCGAAAGGGTGGGAGTTTCCAACGGCGGGGAAAAGGTTGAAAATTGGGGTTCCGGTGAAGGAAGGGTATAGTGAGTTCGTGAGAGTGAATGGAAAGGAGGTGGAAGGGTATTGTAGGGACGTGTTCGATGCGGTAATAGAAGCGCTTCCGTATGCCCTTCCGTTTGATTACATTCCCTTTGCACTGCCAAATGGATCTAGCGCCGGTTCCTACAATGACCTCATCATGCAAGTTAACAGAGGGGTCTACGACGGTGCAGTAGGAGACTTAACCATCGTAGCAAACAGATCCAAGTACGTTGATTTCACCTTGCCATTCACAGAGTCGGGAGTTTCAATGATCGTTCCAACACAACCCAACTCCAAGAACAGAGCATGGCTTTTTCTGAAGCCTCTCACTTTAGACCTTTGGATTACAAGCTTCTGCTTCTTCGTCTTCATGGGGTTTGTGGTTTGGATTCTGGAACATCGTATCAACCAAGACTTTCGTGGTCCTCCCACTCATCAGATCGGTACCAGCCTCTGGTACTCCTTTTGCACCATGGTCTTCGCCCAAAGGGAGACTTTGATAAGTAATTTGGCAAGGTTCGTGGTGGTGATATGGTTCTTCGTGGTGTTCGTTCTAACTCAAAGCTACACGGCGAGCTTGACTTCTCTGTTGACAGTGCAACAATTACAACCCACCATTACAAATATAAATGAGTTGTTGAAGACGCAGCCATGGGTGGGATATCAAGATGGTTCATTTGTTTGGGGGCTGTTGACCTCTGTGGGGATTAAGAATCTCAAGTCTTATGGGTCTCCTGAGGAACTCGACGAGTTGCTCAGACTAGGAAGTTCTAATGGTGGCATTGATGCTGCTTTTGATGAAATGCCTTACGTTAAGCTCTTCCTTTCCATGTTTCATGATAAGTACACCATGGGTGATCCCAACTACAAAACTGATGGATTTGGATTTGCATTTCCCATTGGCTCGCCATTGGTAGCAGACATATCAAGAGCGGTGTTAAATGTGACAGAGAGTGAGAAGATGAACCAATTACAAAGGAAATGGTTTAAGAATGAAGACAACTCGTGGTCTTCCATCTCCAAGATCACTCCTTCGAGGCTCAACTTAAGCAGCTTTTGGGGCCTATTTCTCATTGCCGGCACCGCCGCTATCACCGCCCTCCTCATCTACTTCATCATTTTCCTTTACAAAGAACAACACACGCTTTCTCACGCCGTCAATGAAGACTCTAACTCCTCTATTGGCAGTAAAATTCGAGCTTTGCTCAGAATCTATGACAAAATAGACTTGACTTCACACATGTTCAAAAAGAGTAATCATTCTCAGATGGCAGACAACAAGATTCATGCAATCTACGGTGACTCCGTTGGTGCCTCACCGAGCTCCAATTACCCGCCTAGTCCATCGAATTATTCGGACCATGACAGTGACTCCGAATAA 2736 47.99 MKPNQGIRRALWFIAGCVLLVATAGEARNVSVGVVLDMESWVGKMGLSCIHMSLSEFYQANPHYNTRIVLHPKDSASDVVGAAAAALDLIKNNKVQAILGPTTSMQTNFVIKLAHKAHVPILTFTASSPRLASYRSPYFFRLTQTDSAQVAAISALVKAYNWRQVVLIYQDDEFGDGMLPYLIDALQDVNARVPYRSVIDPTATEDQIGEELYKLMTMPTRVFLVHMQPSLAIRLFAKANKIGMMREGYAWILTDVIANLLDSMSSSVLNSMEGALGVKTYVPKSMELARFKIKWKREFVMENSVLTDPHLDIFGLWAYDAARALAMAIEKTGAKNFTFENPKGSENLTDLETLGVSRNGEKIVEGLSKTQFMGLTGNYEIVNGQLQSAAFEIVNVNSNGGNRVGFWNPEKGLLGNNMIVIWPGTTEAVPKGWEFPTAGKRLKIGVPVKEGYSEFVRVNGKEVEGYCRDVFDAVIEALPYALPFDYIPFALPNGSSAGSYNDLIMQVNRGVYDGAVGDLTIVANRSKYVDFTLPFTESGVSMIVPTQPNSKNRAWLFLKPLTLDLWITSFCFFVFMGFVVWILEHRINQDFRGPPTHQIGTSLWYSFCTMVFAQRETLISNLARFVVVIWFFVVFVLTQSYTASLTSLLTVQQLQPTITNINELLKTQPWVGYQDGSFVWGLLTSVGIKNLKSYGSPEELDELLRLGSSNGGIDAAFDEMPYVKLFLSMFHDKYTMGDPNYKTDGFGFAFPIGSPLVADISRAVLNVTESEKMNQLQRKWFKNEDNSWSSISKITPSRLNLSSFWGLFLIAGTAAITALLIYFIIFLYKEQHTLSHAVNEDSNSSIGSKIRALLRIYDKIDLTSHMFKKSNHSQMADNKIHAIYGDSVGASPSSNYPPSPSNYSDHDSDSE 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3530829 3535060 + CmaCh12G006600.1 Cma12g00660 305150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00660 911 Gene3D - 356 441 - -
Cma12g00660 911 Gene3D - 707 787 - -
Cma12g00660 911 Gene3D - 553 674 - -
Cma12g00660 911 CDD PBP1_GABAb_receptor_plant 31 413 IPR044440 -
Cma12g00660 911 SMART GluR_14 441 783 IPR001320 GO:0015276|GO:0016020
Cma12g00660 911 Gene3D - 147 310 - -
Cma12g00660 911 Gene3D - 442 552 - -
Cma12g00660 911 MobiDBLite consensus disorder prediction 889 911 - -
Cma12g00660 911 Pfam Ligand-gated ion channel 783 814 IPR001320 GO:0015276|GO:0016020
Cma12g00660 911 Pfam Receptor family ligand binding region 52 398 IPR001828 -
Cma12g00660 911 Pfam Bacterial extracellular solute-binding proteins, family 3 455 782 IPR001638 -
Cma12g00660 911 SUPERFAMILY Periplasmic binding protein-like I 26 433 IPR028082 -
Cma12g00660 911 SUPERFAMILY Periplasmic binding protein-like II 418 783 - -
Cma12g00660 911 MobiDBLite consensus disorder prediction 889 905 - -
Cma12g00660 911 PANTHER GLUTAMATE RECEPTOR 2.9 30 879 - -
Cma12g00660 911 CDD GluR_Plant 440 781 - -
Cma12g00660 911 PIRSF IGluLR_plant 3 900 IPR017103 -
Cma12g00660 911 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 879 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00074 Cma-Chr1:323700 Cma12g00660 Cma-Chr12:3530829 0 dispersed
Cma01g01234 Cma-Chr1:8887488 Cma12g00660 Cma-Chr12:3530829 3.02E-129 dispersed
Cma05g00277 Cma-Chr5:1174452 Cma12g00660 Cma-Chr12:3530829 0 dispersed
Cma10g00422 Cma-Chr10:1927258 Cma12g00660 Cma-Chr12:3530829 0 dispersed
Cma12g00380 Cma-Chr12:1953960 Cma12g00660 Cma-Chr12:3530829 0 dispersed
Cma12g00381 Cma-Chr12:1962550 Cma12g00660 Cma-Chr12:3530829 0 dispersed
Cma12g00660 Cma-Chr12:3530829 Cma20g00624 Cma-Chr20:2914311 4.46E-173 dispersed
Cma12g00660 Cma-Chr12:3530829 Cma12g00665 Cma-Chr12:3569926 0 proximal
Cma12g00659 Cma-Chr12:3524107 Cma12g00660 Cma-Chr12:3530829 1.99E-106 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00660 K05387 - csv:101205977 1288.48