Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00661 ATGGCGATCCAATTTAAGTTCAGGAGCTCGGTGATCTTCGACTCGGTGGATATCGATGGCCGACCCTCCATATCAATTGGCGATCTTAAATCCAAAATTATTCGGATGAAGAACCTCGATACCTGCCAAAACTTTGATCTCGTTTTCTCCGATGCCCGTACCGGACAAGATTTGGTTGACGAGAAATTTGAAATTCCTAGTGGTTCATGCGTGATCATAAAGAGAGTTCCTGCGGGATCAGTTCCTTCCAATGTTGTACATCACGACTTGTTTGGGAAATTTCAAGTCAAAGACACTGACATGGTTAATTCATCTCGTCCAGTGGAGGCTGAGACGGACAATTTTGATGATTTTGGTGTAGACTTATACCCTATTCGCAAAAAAACATCATCACTTTCTCTCAACCATAAAAAATATGATGCTGTTAGACATTATAAGGAGACTGAAAGAGGATATATTGAGCCTGAAGGAAGTGGCATTAGTGAGGCTATTCAAAGAGATTCAAGTCATGGTACAACAGTTGGAGGAACTGAGCTGCAAACAAACATAAAAGTTCATATTGGCGAGGGAATTGGTTTGGAGAAACCAGTTGTTGCAATGGCTTCAGTGAATCATGATTGTGAAATACCGCCAGAACTTAAGTGTACGCTTTGCAAATCACTCTTTGTGGATGCCGTTATTATTGGTTGCTGTAAGCATAGCTTTTGTGAGAAATGCATTCATCATGTTCTACTGCGAAAGGCAAAGTGCCCTAATTGTGCCTCTACTAAATATAGACTAGAAAATTTGTTGCCAAATTTATCTCTTAGGCAAAATGTTGCTGATTTCCTTGAGTCTCAGATCCTGATGGGCAACCCAGACAATGCCATTCATCATGATGCACCAGATGAAGAATCAAGAATTGAAGGAGAGGACATGCCATTTCTGTCGTATGCTACCAGTAGGGGTTGTAATCAAGCAGTGGTGGAAGACATCAATGACTCATCATTAAAAAGAAATATGGTTGATGGAGCACTATTTGGATCGGGCCACCCTGAAAAATTTGGTGGTATGCCACAAGACCTTCCTCCTTTTGATGATTGCCAAGGGGAAAGTCAGCCTGTTTTTGGGGATTTTAAGCATGGGTTGCTGATCAACGCCTCTGATATACCGGGAAAAATACAAAACCTTGCAGATTTTAGAAGACAAAAAAAGCGATGCCGTGCTTGTTACATGTGTGGTTCTCTGGACCATCTCATTAGAGACTGTCCAGTTGCTTCAAAGCCACATCCCATGCATCTAATGGGAGCTACGCCATATTATGCATCACCTTGGCATCATGTCAGTTCCTTTTCAAACCTGTATGGTTGTACCATGCCTTTCAATACATCAACGGTACCTGAAGCAAATTCTTACTGGGCATCTCTTTATGGTGGATATCCTGCCCCAAGTGGATATGTGGGCATGAGAGACATGACTGCTCCACCACTCCGGAAGATTGATGAGTTCTGCGGTGGTTATTCACAATCCGTAGACGTTAGTGACACTAATAAAAGAGGGATGATACCTGATAATCGTACCAGGAGGGCAATGACTTTCATCAATGAGGATGGGTGCGAGGGAGAAGATAATGTTGCTAAGAATAGAGGTCTACATGAGTGGGATGGAAGATCAAGAGACTATAGAATGCTCGAAGAAAAGGAACACCCGCGTAGAGAAACTGCCAAGGACGAAATAAATTGGCTGTATGATGAAAAAAGGAAGAGTTCCCGTTCTTCTAAAGATGCTATGATCAATCAATTCAACGGGAGATTAGGCCTGGACACAGAAGGCTTGCCTTGCAACACCAAATTACTGACTAAGGAGAGGTCTGAACATCACCATAGAAGCTTCCGGGAGGTTGGAGGGAGGACAGATGAATGTTGCAGTCATTTTAGCTCGAATCACCACAAAAAATGCAAATTGAAAGAAGATAAAACCAATATGGTCGAGTTCGACTTAAAGCGACAAACAAAGAAGCATCCTAACGACTCAAAGTTTGATTTAGAACAAAGCTTTCCCAGATCGAGAGGTTCTAAGCACAATGCGCTCACTCAAGATCATCATCGGCAAATGGTTTGCGAGCCAAACGATGATCGTGTCCATAAATATAACAAAGAAGGCAGTGAAAAACTACAGATCTGA 2163 42.21 MAIQFKFRSSVIFDSVDIDGRPSISIGDLKSKIIRMKNLDTCQNFDLVFSDARTGQDLVDEKFEIPSGSCVIIKRVPAGSVPSNVVHHDLFGKFQVKDTDMVNSSRPVEAETDNFDDFGVDLYPIRKKTSSLSLNHKKYDAVRHYKETERGYIEPEGSGISEAIQRDSSHGTTVGGTELQTNIKVHIGEGIGLEKPVVAMASVNHDCEIPPELKCTLCKSLFVDAVIIGCCKHSFCEKCIHHVLLRKAKCPNCASTKYRLENLLPNLSLRQNVADFLESQILMGNPDNAIHHDAPDEESRIEGEDMPFLSYATSRGCNQAVVEDINDSSLKRNMVDGALFGSGHPEKFGGMPQDLPPFDDCQGESQPVFGDFKHGLLINASDIPGKIQNLADFRRQKKRCRACYMCGSLDHLIRDCPVASKPHPMHLMGATPYYASPWHHVSSFSNLYGCTMPFNTSTVPEANSYWASLYGGYPAPSGYVGMRDMTAPPLRKIDEFCGGYSQSVDVSDTNKRGMIPDNRTRRAMTFINEDGCEGEDNVAKNRGLHEWDGRSRDYRMLEEKEHPRRETAKDEINWLYDEKRKSSRSSKDAMINQFNGRLGLDTEGLPCNTKLLTKERSEHHHRSFREVGGRTDECCSHFSSNHHKKCKLKEDKTNMVEFDLKRQTKKHPNDSKFDLEQSFPRSRGSKHNALTQDHHRQMVCEPNDDRVHKYNKEGSEKLQI 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3536318 3544127 + CmaCh12G006610.1 Cma12g00661 305151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00661 720 ProSiteProfiles DWNN domain profile. 3 77 IPR014891 GO:0008270
Cma12g00661 720 ProSitePatterns Zinc finger RING-type signature. 231 240 IPR017907 -
Cma12g00661 720 PANTHER RETINOBLASTOMA-BINDING PROTEIN 6 1 696 IPR033489 GO:0006397|GO:0016567|GO:0061630
Cma12g00661 720 ProSiteProfiles Zinc finger RING-type profile. 215 253 IPR001841 -
Cma12g00661 720 Pfam Zinc knuckle 401 417 IPR001878 GO:0003676|GO:0008270
Cma12g00661 720 CDD vRING-HC-C4C4_RBBP6 210 253 - -
Cma12g00661 720 MobiDBLite consensus disorder prediction 663 720 - -
Cma12g00661 720 Gene3D - 1 81 - -
Cma12g00661 720 ProSiteProfiles Zinc finger CCHC-type profile. 403 417 IPR001878 GO:0003676|GO:0008270
Cma12g00661 720 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBBP6-LIKE ISOFORM X1 1 696 - -
Cma12g00661 720 SUPERFAMILY RING/U-box 207 278 - -
Cma12g00661 720 Pfam Zinc finger, C3HC4 type (RING finger) 214 253 - -
Cma12g00661 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 282 IPR013083 -
Cma12g00661 720 Pfam DWNN domain 3 77 IPR014891 GO:0008270
Cma12g00661 720 SMART DWNN_2 3 77 IPR014891 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00661 - - - bhj:120075688 1048.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00794 Cma-Chr6:4157864 Cma12g00661 Cma-Chr12:3536318 1.02E-12 dispersed
Cma12g00661 Cma-Chr12:3536318 Cma16g01127 Cma-Chr16:8672552 2.73E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g150 . . . . . . . . . Cmo12g00602 . . . Car12g00644 . Cpe07g00577 . Bhi04g01513 Tan02g1585 . . Hepe08g1435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00661 . . . . . . . . . . . Cla08g00988 . . . . . . Lsi08g00832 . Chy03g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010055 0 4 0 0 0 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00661 Cma_Chr12 FPKM 6.974543 7.503452 9.802688 9.473691 4.232157 4.667909 4.222938 14.308945 12.802862 13.62521