Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00678 ATGGTGACTCTGCAAATTCAAGCTTATAAACCCCACCACCTTCTCCGCCGTTTCATCATCCTCCACTTCCACTCCTTTCACTTGCAACTCTCTCTCTCTCTCTCTCTCTCCGCCGTCTCTTCCTCCGCCGCCATGGATCCCTACAAGTACCGCCCTTCAAGTGCCTACAACACGCCCTTTTGCACCACCAACTCCGGTGCACCAATATGGAACAACACCGCCGTCATGTCGGTCGGAGAACGAGGTCCCATTCTTTTGGAAGACTACCAACTCATCGAAAAAATCGCAACCTTCACACGCGAGCGTATCCCGGAGCGTGTCGTCCACGCAAGAGGAGCCAGTGCCAAGGGATTCTTTGAAGTAACCCATGACATTTCCAACCTCACTTGCGCCGACTTCCTTCGCGCCCCCGGAGTCCAAACCCCAGTCATCGTCCGCTTCTCCACCGTCATCCACGAACGCGGTAGCCCTGAGACCCTCCGCGATCCCCGTGGCTTCGCCGTCAAATTCTACACACGAGAAGGCAACTTCGACTTGGTCGGTAATAACTTCCCGGTCTTCTTCGTCCGCGATGCCATGCAATTCCCCGACGTCATCCGCGCGTTCAAACCAAACCCTAAATCCCATCTCCAAGAACCATGGAGATACCTGGATTTCTGTTCTTACCACCCCGAAAGTCTATTGTCGTTTGCTTGGTTTTACGACGACGTCGGCATCCCGATCAACTACCGCCACATGGAGGGCTTCGGCGTGCAAGCTTACTCCTTAATCAACAAATCCGGCAAAGCCCGGCTCGTGAAATTCCATTGGAAACCCACTTGTGGGGTTAAAAGCATGATGGAGGAGGAAGCCATTAGAATTGGTGGGACGAACCACAGCCATGCCACTCAAGATCTATACGAGTCAATAGCCTCCGGGAACTTCCCGGAGTGGAGGCTCTACATTCAAACCATTGATTACGAGGATCAGAATAAGTATGATTTTGAGCCGTTGGATACGACGATCACTTGGCCGGAGGATGTGGTGCCGTTGCAGCCGGTGGGGCGGTTGGTGTTGAACAAGAACATAGATAATTTCTTTGCGGAGAATGAGATGTTGGCGTTCTCCATGTCGTTGGTGCCTGGGATTCATTACTCCGATGATAAGATGTTGCAAGCTAGGAGCTTTGCTTATGCTGATACTCAAAGGCATCGCCTTGGCCCTAATTACCTTCAGCTTCCGGTCAATGCTCCCAAGTGTCCGCATCATAATAACCATCATGAGGGGTTTATGAACTTCATGCATAGAGATGAAGAGGTGAATTACTTTCCTTCTAGATATGATCCTTGCCGGCATGCTGAGAAGTTTCCGATGCCGCCCAATGTGTTGACCGGAAAAAGAGAAAGGTGTGTGATTCCAAAGGAGAATAACAACTTCAAGCAAGCTGGGGATAGATACCGATCATGGGCACCGGACAGGCAAGACCGGTTCGTGAAGCGGTTTGTGGAAGCATTGTCGGATCCCCGCGTGACGCATGAAGTTCGCAACATATGGATCTCTTATTGGTCTCAGGTCTCTGGGCCAAAAGATAGCGTCTCGACTGAACGTGAGGCCGAACATCTAAGAAAAGGAAGCAAGCCCAACACTAGTATTAGTACCCGGGGGTTTCTCTTGCAATGGGTGATGTTAATATGCTAA 1677 50.92 MVTLQIQAYKPHHLLRRFIILHFHSFHLQLSLSLSLSAVSSSAAMDPYKYRPSSAYNTPFCTTNSGAPIWNNTAVMSVGERGPILLEDYQLIEKIATFTRERIPERVVHARGASAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDAMQFPDVIRAFKPNPKSHLQEPWRYLDFCSYHPESLLSFAWFYDDVGIPINYRHMEGFGVQAYSLINKSGKARLVKFHWKPTCGVKSMMEEEAIRIGGTNHSHATQDLYESIASGNFPEWRLYIQTIDYEDQNKYDFEPLDTTITWPEDVVPLQPVGRLVLNKNIDNFFAENEMLAFSMSLVPGIHYSDDKMLQARSFAYADTQRHRLGPNYLQLPVNAPKCPHHNNHHEGFMNFMHRDEEVNYFPSRYDPCRHAEKFPMPPNVLTGKRERCVIPKENNNFKQAGDRYRSWAPDRQDRFVKRFVEALSDPRVTHEVRNIWISYWSQVSGPKDSVSTEREAEHLRKGSKPNTSISTRGFLLQWVMLIC 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3665565 3669765 + CmaCh12G006780.1 Cma12g00678 305168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00678 558 ProSitePatterns Catalase proximal active site signature. 98 114 IPR024708 GO:0004096
Cma12g00678 558 PANTHER CATALASE 31 518 - -
Cma12g00678 558 Pfam Catalase 62 441 IPR011614 GO:0004096|GO:0020037
Cma12g00678 558 SMART Catalase_2 62 444 IPR011614 GO:0004096|GO:0020037
Cma12g00678 558 PIRSF Catalase_clade1-3 51 534 IPR024711 GO:0004096|GO:0006979|GO:0020037
Cma12g00678 558 Pfam Catalase-related immune-responsive 468 519 IPR010582 -
Cma12g00678 558 ProSitePatterns Catalase proximal heme-ligand signature. 387 395 IPR002226 GO:0020037
Cma12g00678 558 PANTHER CATALASE 31 518 IPR018028 GO:0004096|GO:0006979|GO:0020037
Cma12g00678 558 PRINTS Catalase signature 138 156 IPR018028 GO:0004096|GO:0006979|GO:0020037
Cma12g00678 558 PRINTS Catalase signature 159 176 IPR018028 GO:0004096|GO:0006979|GO:0020037
Cma12g00678 558 PRINTS Catalase signature 178 196 IPR018028 GO:0004096|GO:0006979|GO:0020037
Cma12g00678 558 PRINTS Catalase signature 75 98 IPR018028 GO:0004096|GO:0006979|GO:0020037
Cma12g00678 558 PRINTS Catalase signature 374 400 IPR018028 GO:0004096|GO:0006979|GO:0020037
Cma12g00678 558 PRINTS Catalase signature 343 370 IPR018028 GO:0004096|GO:0006979|GO:0020037
Cma12g00678 558 CDD catalase_clade_1 62 518 - -
Cma12g00678 558 Gene3D Catalase core domain 59 536 - -
Cma12g00678 558 SUPERFAMILY Heme-dependent catalase-like 53 520 IPR020835 GO:0020037
Cma12g00678 558 ProSiteProfiles catalase family profile. 58 536 IPR018028 GO:0004096|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00678 K03781 katE, CAT, catB, srpA; catalase [EC:1.11.1.6] - csv:101216662 977.237
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma09g00054 Cma12g00678 CCT
Cma01g02012 Cma12g00678 CCT
Cma05g00977 Cma12g00678 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00054 Cma-Chr9:245537 Cma12g00678 Cma-Chr12:3665565 0 dispersed
Cma01g02012 Cma-Chr1:12884453 Cma12g00678 Cma-Chr12:3665565 0 wgd
Cma12g00678 Cma-Chr12:3665565 Cma05g00977 Cma-Chr5:7879843 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g98 Blo01g01636 Blo12g00854 . Bda03g00319 Bpe02g00309 Bpe04g00280 Bma04g00287 Bma01g02409 Cmo05g00996 Cmo12g00616 Cma01g02012 Cma09g00054 Car01g01582 Car12g00658 . Cpe06g00023 Cpe07g00589 Bhi04g01227 . . . Hepe08g1506 . . Cla08g00942 Cam08g1392 Cec08g0974 Cco08g1097 Clacu08g1099 . Cre08g0883 . . . . Lsi04g01805 Csa04g02699 . Cme03g01342 . . Bda11g00972 . . . . . Sed08g1839 . . Cma12g00678 Cma05g00977 Car05g00858 Car09g00047 Cpe11g00788 Cpe02g00036 Bhi09g02890 Tan01g5104 Cmetu03g1562 . Hepe01g2339 Mch11g0058 . Cla11g01822 Cam11g1888 Cec11g1913 Cco11g1920 Clacu11g2052 Cmu11g1857 Cre11g2263 Lsi08g00787 . Chy07g00390 Cme07g00057
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001453 3 3 2 3 3 1 4 2 1 3 1 2 4 3 1 2 1 3 4 2 3 2 2 2 2 1 2 5 2 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00678 Cma_Chr12 FPKM 111.0811 114.474541 1278.6073 1231.214233 186.369278 182.850067 165.37854 1301.145264 1312.744385 1235.017578