Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00679 ATGGGCAACCTCTGCGGCACTCCCGTCGACACCCACACCCCGCCGCCCACCAAGCCCTCCTCCCCAGTCTCCTCCCAACGCCACGCCTCCACCACGCCCCGGAATCTCAAAGTATACACCTTGTCGGAGTTGAAGACGGCCACCAGGAATTTCCGGCCCGACACCATGCTGGGTGAGGGCGGATTTGGGAGAGTCTTCAAAGGCTGGGTCGATGAGACAACCTACGCGCCGTCCAAGGTCGGCGTCGGGATTCCTGTCGCCGTGAAAAAGTCAAACCCCGACAGCTCTCAGGGTCTTCGCGAATGGAAGGCGGAAGTGGATTTTCTGGGGAAATTTAGCCATCCAAATGTGGTGAAATTGATCGGATATTGCTGGGAAGAAAAGCAATTTCTTCTTGTTTATGAACATATGCAGAGAGGAAGCTTGGAAAATCACTTATTTCGAAAAGGTGTAGAGCCTCTTTCATGGGAAACGAGGATTAAAATAGCCACAGGGGCGGCGCGTGGTTTAACGTTCCTCCACACGTCGGAGAAGAGCGTGATTTACCGCGACTTCAAGGCGTCGAATATTCTTCTGGATGGGGATTTCCACGCAAAGCTGTCTGATTTTGGGCTTGCAAAATTCGGCCCATCTAATGGCGACACCCACGTCAGCACAAATCCAGTTGGCACTTACGGTTACGCTGCACCCGAGTACATTGCAACTGGACATTTGTACATAAAGAGTGACGTGTATGGGTTCGGTGTGGTGCTGCTTGAGCTGCTAACTGGGCTGCGAGCAGTGGACCCAAACCGGCCCAGTCGGTCTCACAACTTAGTGGAGTGGGCCGAGCCGTCACTGGCCCACAAGAAGAAGATAAAGAAGCTAATGGACCCAAGGCTTGGGGACGACTACTCGCCGAAAGGAGCCTGGGCCTTAGCCGAACTCATTTTGAAATGTTTGGAGCAGAACCCTAGAAACCGGCCCTCCATGGAACAGGTGCTGGAGATTCTGGAGAAAGTTAGTACCCTTAAAGATAGGCCCAAGGAGCCCAAATCAAGGGCTAGGACGCCCACCCATTATTAG 1065 53.33 MGNLCGTPVDTHTPPPTKPSSPVSSQRHASTTPRNLKVYTLSELKTATRNFRPDTMLGEGGFGRVFKGWVDETTYAPSKVGVGIPVAVKKSNPDSSQGLREWKAEVDFLGKFSHPNVVKLIGYCWEEKQFLLVYEHMQRGSLENHLFRKGVEPLSWETRIKIATGAARGLTFLHTSEKSVIYRDFKASNILLDGDFHAKLSDFGLAKFGPSNGDTHVSTNPVGTYGYAAPEYIATGHLYIKSDVYGFGVVLLELLTGLRAVDPNRPSRSHNLVEWAEPSLAHKKKIKKLMDPRLGDDYSPKGAWALAELILKCLEQNPRNRPSMEQVLEILEKVSTLKDRPKEPKSRARTPTHY 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3670396 3672550 - CmaCh12G006790.1 Cma12g00679 305169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00679 354 Gene3D Transferase(Phosphotransferase) domain 1 137 350 - -
Cma12g00679 354 ProSitePatterns Protein kinases ATP-binding region signature. 57 90 IPR017441 GO:0005524
Cma12g00679 354 MobiDBLite consensus disorder prediction 1 32 - -
Cma12g00679 354 PIRSF TyrPK_CSF1-R 52 152 - -
Cma12g00679 354 PIRSF TyrPK_CSF1-R 284 353 - -
Cma12g00679 354 PIRSF TyrPK_CSF1-R 144 264 - -
Cma12g00679 354 PANTHER OS01G0588500 PROTEIN-RELATED 28 349 - -
Cma12g00679 354 SUPERFAMILY Protein kinase-like (PK-like) 25 332 IPR011009 -
Cma12g00679 354 ProSiteProfiles Protein kinase domain profile. 51 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00679 354 Gene3D Phosphorylase Kinase; domain 1 29 136 - -
Cma12g00679 354 Pfam Protein tyrosine and serine/threonine kinase 55 331 IPR001245 GO:0004672|GO:0006468
Cma12g00679 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Cma12g00679 354 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 28 349 - -
Cma12g00679 354 CDD STKc_IRAK 57 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00679 - - - csv:101216893 644.039
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00679 Cma-Chr12:3670396 Cma16g01278 Cma-Chr16:9726797 2.40E-150 dispersed
Cma12g00679 Cma-Chr12:3670396 Cma05g00976 Cma-Chr5:7876417 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g92 . . . . . . . . . Cmo12g00617 . . . Car12g00659 . . Cpe07g00590 . . . . . . . . . . . . . . . . Cone17ag1455 . . . . . Blo17g00905 . . . . . . . . . . Cma12g00679 . Car05g00857 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004298 1 1 1 0 0 0 1 1 1 1 1 0 2 1 0 2 1 0 3 1 1 0 0 0 0 2 0 0 0 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68961 PF07714 PK_Tyr_Ser-Thr 5.20E-47 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00679 Cma_Chr12 FPKM 37.544197 38.084297 3.431632 3.319287 18.624685 12.577422 17.595486 10.528193 11.20688 9.798752