Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00680 ATGAGTTGCTTTTGTTGTATTAGTTCTCACACTAAAGATGGGAACGGAGTCGAAATTGATAATGGTGTTGAATTTGAATCCCTGCGTTTTGGTGAGGGCTGTTCAAAGGGGAGCGCTGGTGTTCGTAGTTTCAAGTTCCGTGAACTCGCCGCAGCCACAAGAGGGTTCAAGGAAGTGGATTTGCTTGGCGAGGGTGGGTTTGGACGCGTCTACAAAGGGCGTTTGGAAACAGGGCAGATTGTTGCAGTTAAACAGCTTAATCGTGATGGGCGTCAAGGGTTTCAGGAATTCATTGTGGAAGTTCTTATGTTGAGTTTGCTACACCATCCCAATCTTGTTACCTTGATTGGTTACTGTAGTGATGGAGATGAGAGGCTTTTGGTTTATGAGTTCATGCCTATGGGAAGCTTGAATGATAACCTTTTTGATTTGGGTAGTGACAAAGAGCCACTGAGTTGGAATACAAGGATCAAGATTGCAATCGGTGCTGCTCGAGGCCTCGAATATCTCCACTGTGAAGCAAATCCCCCGGTCATATACCGTGACTTGAAATCAGCTAATATCTTGTTGGACAATTACTTTAATCCGAAGCTTTCAGATTTCGGTCTAGCTAAACTAGGACCAGTCGGTGACAATACTCACGTTTCAACTAGAGTCATGGGAACACATGGCTATTGTGCTCCAGAGTATGCCATGAGTGGTAAATTAACCCTCAAATCCGATATTTACAGCTTCGGCGTGGTTCTGCTCGAGCTTATTACAGGTCGTAAGGCAATTGATACTACAAGGAGAACAGGGGAGCAGAGCCTAGTTTCTTGGTCTCATCCTTTCCTGAAGGACCGAAGAAAGTTCGGGCAATTAGTCGATCCCCTATTGGAAGGACGTTTCCCTCTTCGTTGTTTACAACAAGCAGTTGCAGTTACTGCAATGTGTCTTCAGGAACAACCATCATTTCGCCCTCATATTGGACAAAACATTCCTCGCTACAACCATCACTTCCACAACAGAATGGATACACCAATGGCGAGCTATCGAATCCGTGAAACGACTAAACATCTGTTTGGAGATTGCTGTATACAAGTCGCCGAACAAGCCATGAGGAGATGTTTACACCTACGTCAGCCGAAAGCAGCTTGTCGAAAGACACATATCAATTCATTTCAGCGTGTGGACCACGAAGCTACTCGGGATGTTCCAAGGTACGTATCAGGTGCGTAA 1218 45.24 MSCFCCISSHTKDGNGVEIDNGVEFESLRFGEGCSKGSAGVRSFKFRELAAATRGFKEVDLLGEGGFGRVYKGRLETGQIVAVKQLNRDGRQGFQEFIVEVLMLSLLHHPNLVTLIGYCSDGDERLLVYEFMPMGSLNDNLFDLGSDKEPLSWNTRIKIAIGAARGLEYLHCEANPPVIYRDLKSANILLDNYFNPKLSDFGLAKLGPVGDNTHVSTRVMGTHGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAIDTTRRTGEQSLVSWSHPFLKDRRKFGQLVDPLLEGRFPLRCLQQAVAVTAMCLQEQPSFRPHIGQNIPRYNHHFHNRMDTPMASYRIRETTKHLFGDCCIQVAEQAMRRCLHLRQPKAACRKTHINSFQRVDHEATRDVPRYVSGA 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3678680 3681785 - CmaCh12G006800.1 Cma12g00680 305170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00680 405 SUPERFAMILY Protein kinase-like (PK-like) 40 324 IPR011009 -
Cma12g00680 405 Pfam Protein kinase domain 57 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00680 405 Gene3D Transferase(Phosphotransferase) domain 1 132 353 - -
Cma12g00680 405 PANTHER OS07G0668900 PROTEIN 40 326 - -
Cma12g00680 405 Gene3D Phosphorylase Kinase; domain 1 32 131 - -
Cma12g00680 405 PANTHER OS07G0668900 PROTEIN 40 326 - -
Cma12g00680 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Cma12g00680 405 ProSiteProfiles Protein kinase domain profile. 56 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00680 405 SMART serkin_6 56 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00680 405 CDD STKc_IRAK 62 324 - -
Cma12g00680 405 ProSitePatterns Protein kinases ATP-binding region signature. 62 84 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g02016 Cma12g00680 CCT
Cma09g00051 Cma12g00680 CCT
Cma01g02016 Cma12g00680 ECH
Cma09g00051 Cma12g00680 ECH
Cma05g00975 Cma12g00680 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00051 Cma-Chr9:217016 Cma12g00680 Cma-Chr12:3678680 9.52E-174 dispersed
Cma12g00680 Cma-Chr12:3678680 Cma06g01475 Cma-Chr6:9381522 8.97E-155 dispersed
Cma01g02016 Cma-Chr1:12910712 Cma12g00680 Cma-Chr12:3678680 0 wgd
Cma12g00680 Cma-Chr12:3678680 Cma05g00975 Cma-Chr5:7870534 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68962 PF00069 Pkinase 4.20E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00680 - - zju:107419850 521.931