Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00680 | ATGAGTTGCTTTTGTTGTATTAGTTCTCACACTAAAGATGGGAACGGAGTCGAAATTGATAATGGTGTTGAATTTGAATCCCTGCGTTTTGGTGAGGGCTGTTCAAAGGGGAGCGCTGGTGTTCGTAGTTTCAAGTTCCGTGAACTCGCCGCAGCCACAAGAGGGTTCAAGGAAGTGGATTTGCTTGGCGAGGGTGGGTTTGGACGCGTCTACAAAGGGCGTTTGGAAACAGGGCAGATTGTTGCAGTTAAACAGCTTAATCGTGATGGGCGTCAAGGGTTTCAGGAATTCATTGTGGAAGTTCTTATGTTGAGTTTGCTACACCATCCCAATCTTGTTACCTTGATTGGTTACTGTAGTGATGGAGATGAGAGGCTTTTGGTTTATGAGTTCATGCCTATGGGAAGCTTGAATGATAACCTTTTTGATTTGGGTAGTGACAAAGAGCCACTGAGTTGGAATACAAGGATCAAGATTGCAATCGGTGCTGCTCGAGGCCTCGAATATCTCCACTGTGAAGCAAATCCCCCGGTCATATACCGTGACTTGAAATCAGCTAATATCTTGTTGGACAATTACTTTAATCCGAAGCTTTCAGATTTCGGTCTAGCTAAACTAGGACCAGTCGGTGACAATACTCACGTTTCAACTAGAGTCATGGGAACACATGGCTATTGTGCTCCAGAGTATGCCATGAGTGGTAAATTAACCCTCAAATCCGATATTTACAGCTTCGGCGTGGTTCTGCTCGAGCTTATTACAGGTCGTAAGGCAATTGATACTACAAGGAGAACAGGGGAGCAGAGCCTAGTTTCTTGGTCTCATCCTTTCCTGAAGGACCGAAGAAAGTTCGGGCAATTAGTCGATCCCCTATTGGAAGGACGTTTCCCTCTTCGTTGTTTACAACAAGCAGTTGCAGTTACTGCAATGTGTCTTCAGGAACAACCATCATTTCGCCCTCATATTGGACAAAACATTCCTCGCTACAACCATCACTTCCACAACAGAATGGATACACCAATGGCGAGCTATCGAATCCGTGAAACGACTAAACATCTGTTTGGAGATTGCTGTATACAAGTCGCCGAACAAGCCATGAGGAGATGTTTACACCTACGTCAGCCGAAAGCAGCTTGTCGAAAGACACATATCAATTCATTTCAGCGTGTGGACCACGAAGCTACTCGGGATGTTCCAAGGTACGTATCAGGTGCGTAA | 1218 | 45.24 | MSCFCCISSHTKDGNGVEIDNGVEFESLRFGEGCSKGSAGVRSFKFRELAAATRGFKEVDLLGEGGFGRVYKGRLETGQIVAVKQLNRDGRQGFQEFIVEVLMLSLLHHPNLVTLIGYCSDGDERLLVYEFMPMGSLNDNLFDLGSDKEPLSWNTRIKIAIGAARGLEYLHCEANPPVIYRDLKSANILLDNYFNPKLSDFGLAKLGPVGDNTHVSTRVMGTHGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAIDTTRRTGEQSLVSWSHPFLKDRRKFGQLVDPLLEGRFPLRCLQQAVAVTAMCLQEQPSFRPHIGQNIPRYNHHFHNRMDTPMASYRIRETTKHLFGDCCIQVAEQAMRRCLHLRQPKAACRKTHINSFQRVDHEATRDVPRYVSGA | 405 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3678680 | 3681785 | - | CmaCh12G006800.1 | Cma12g00680 | 305170 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00680 | 405 | SUPERFAMILY | Protein kinase-like (PK-like) | 40 | 324 | IPR011009 | - | |
Cma12g00680 | 405 | Pfam | Protein kinase domain | 57 | 268 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g00680 | 405 | Gene3D | Transferase(Phosphotransferase) domain 1 | 132 | 353 | - | - | |
Cma12g00680 | 405 | PANTHER | OS07G0668900 PROTEIN | 40 | 326 | - | - | |
Cma12g00680 | 405 | Gene3D | Phosphorylase Kinase; domain 1 | 32 | 131 | - | - | |
Cma12g00680 | 405 | PANTHER | OS07G0668900 PROTEIN | 40 | 326 | - | - | |
Cma12g00680 | 405 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 178 | 190 | IPR008271 | GO:0004672|GO:0006468 | |
Cma12g00680 | 405 | ProSiteProfiles | Protein kinase domain profile. | 56 | 334 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g00680 | 405 | SMART | serkin_6 | 56 | 334 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g00680 | 405 | CDD | STKc_IRAK | 62 | 324 | - | - | |
Cma12g00680 | 405 | ProSitePatterns | Protein kinases ATP-binding region signature. | 62 | 84 | IPR017441 | GO:0005524 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g02016 | Cma12g00680 | CCT | |
Cma09g00051 | Cma12g00680 | CCT | |
Cma01g02016 | Cma12g00680 | ECH | |
Cma09g00051 | Cma12g00680 | ECH | |
Cma05g00975 | Cma12g00680 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g00051 | Cma-Chr9:217016 | Cma12g00680 | Cma-Chr12:3678680 | 9.52E-174 | dispersed | |
Cma12g00680 | Cma-Chr12:3678680 | Cma06g01475 | Cma-Chr6:9381522 | 8.97E-155 | dispersed | |
Cma01g02016 | Cma-Chr1:12910712 | Cma12g00680 | Cma-Chr12:3678680 | 0 | wgd | |
Cma12g00680 | Cma-Chr12:3678680 | Cma05g00975 | Cma-Chr5:7870534 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68962 | PF00069 | Pkinase | 4.20E-46 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00680 | - | - | zju:107419850 | 521.931 |