Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00694 ATGTCGGGATCTGAGACTGGTGTGGTGACGAGTAGGGAGCCCTTTAGCATCGGCGTTCAGAATAGCTCCTTACAGTCGCAGGCGGCGGCCCAAAACATGCGATTAACCTTCAGCGCCGATGGTACGGCCGCGTACAAGCCTGTAACTCCTTCAACCTCACCGGCCTATCAGTCCTCCATGGTCGGAGTTTCTGGTAATGACGGAATTGAGGGATCAGCTGGTGGGGGGTCTATATTGCCTCATGGTTTCAACATAAATTCGGTGGGCAGCGAGCAAACAAAGAAGAAAAGGGGGAGGCCGAGGAAGTATGGACCAGATGGCTCCATGGCATTAGCTTTAGGTTCTGGGCCGCCTTCAGGAAGTGGAGGTTTTTCTCCTTCAACTATGGCTAATCCTGCTTCAGAGGGATTAGCCTCACCAAATTCAATGAAGAAAACTAAAGGCAGGCCACATGGTTCTAAGAAAAAACAACAATTGGAAGCTTTGGACCTATTACTTGCAGGACCAGCTGGTATTGGATTCACTCCACATGTTATTGATGTGAAAGCCGGAGAGGATGTATCGTCGAAAATAATGTCTTTTTCTCAGAATGGCCCTAGGGCTATATGTATCCTCTCTGCAAATGGAGCAATATCGAATGTGACATTACGTCAATCTGCTATATCTGGTGGAACTGTTACTTATGAGGGCCGGTTTGAAATCCTGTCACTCTCAGGTTCATTTCTGCTGTCTGAAAATGGTGGTCAGAGAAGCAGAACTGGTGGTTTGAGTGTGTCTTTGTCTGGTCCAGACGGCCGAGTGTTGGGTGGTGGTGTGGCGGGTCTTCTCACGGCTGCATCTCCTGTTCAGGTGGTCGTGGGAAGTTTCGTAGTCGACAGCAACAAGGAACCGAAGTCAGACAGCCAAACAGAACCCGTCTTCGCCTCGCAAATGCCAAACCCAGTTGGCTTTGGTCACTTAACAGGAGGAGGAGGAGGAGGAGGAGCCAGTAGTCCTTCTCACGGGACGCCTAGTGAGTCTTCCAGTGGCGACCCTGACAGCCCCCTTAACAACAGCTCTGGAGCCCGCGACGACAACAACAACAACCATCCACAGGGCATGTCTGGCATGCCATGGAAGTAA 1122 50.71 MSGSETGVVTSREPFSIGVQNSSLQSQAAAQNMRLTFSADGTAAYKPVTPSTSPAYQSSMVGVSGNDGIEGSAGGGSILPHGFNINSVGSEQTKKKRGRPRKYGPDGSMALALGSGPPSGSGGFSPSTMANPASEGLASPNSMKKTKGRPHGSKKKQQLEALDLLLAGPAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGAISNVTLRQSAISGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVVDSNKEPKSDSQTEPVFASQMPNPVGFGHLTGGGGGGGASSPSHGTPSESSSGDPDSPLNNSSGARDDNNNNHPQGMSGMPWK 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3753696 3757377 - CmaCh12G006940.1 Cma12g00694 305184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00694 373 Pfam Plants and Prokaryotes Conserved (PCC) domain 176 290 IPR005175 -
Cma12g00694 373 CDD DUF296 175 278 IPR005175 -
Cma12g00694 373 MobiDBLite consensus disorder prediction 293 373 - -
Cma12g00694 373 MobiDBLite consensus disorder prediction 120 141 - -
Cma12g00694 373 MobiDBLite consensus disorder prediction 331 367 - -
Cma12g00694 373 SUPERFAMILY AF0104/ALDC/Ptd012-like 174 290 - -
Cma12g00694 373 MobiDBLite consensus disorder prediction 294 309 - -
Cma12g00694 373 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 371 IPR039605 GO:0003680
Cma12g00694 373 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 8 371 - -
Cma12g00694 373 MobiDBLite consensus disorder prediction 72 155 - -
Cma12g00694 373 Gene3D - 176 306 - -
Cma12g00694 373 ProSiteProfiles PPC domain profile profile. 170 310 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g02039 Cma12g00694 CCT
Cma05g00961 Cma12g00694 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00694 Cma-Chr12:3753696 Cma16g01152 Cma-Chr16:8858536 6.20E-70 dispersed
Cma01g02039 Cma-Chr1:12986204 Cma12g00694 Cma-Chr12:3753696 1.60E-100 wgd
Cma12g00694 Cma-Chr12:3753696 Cma05g00961 Cma-Chr5:7769242 5.70E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00694 - - cmax:111496396 614.764