Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00701 ATGATCCCTTTTAGAGCCTTGTTTCTTTGTTCTTTGTTGTTTGTGGTCGTATATGCCAATGCCGCCAATGCTGAACCTGAAGTTGGTAAGACACCTGATGTTGAATTTGATAAGATAAATGTTACCGACACTGATACCGATAAAGGAATCGATCTCAAAAAGGCTGATGAATACTGGCAAAAACGTGCTGCTGAAGCTCAAAAGGCTGCTCAAAAGGCCTTCAATCCTAACCCCGATTCCGTTGCTGATAACTTCAACGCCGCCGTCGGCCAGGAGATAGTGAACAGCAACAATTCAAGGAGGAGCTTGAAGAGATTCAGAGGTCCATGCTTGGCGACCAACCCCATTGACAGATGCTGGAGGTGCGACCCAAATTGGGACAAGAATAGAAAAAAGCTAGCCGAATGTCCATTAGGGTTCGGCCACCAAACCATCGGCGGCAAGAGAGGACCCATTTACGTGGTGACAGACGCCTCCGATGAAAACCTAGTCGACCCCAAGCCTGGAACCCTACGCCACGCGGTTGTCCAGAACGGCCCAAGATGGATCATATTCGGGCGCAGCATGATCATCAGGCTATCCCAAGAGCTCATAATCTCAAGCAACAAGACCATCGACGCCCGCGGCTTCAATGTCCACATAGCCTTCGGCGCAGGGCTCACTCTTCAATTCGTGCATAATATCATCATCCATGGCCTTCATATCCATGACATTATTTCCAAATCCGGTGGAATGATTAGAGATGCATTTGATCATTATGGGTTCCGAACACAAAGCGATGGCGATGGTATTTCAATCTTTGGAGGCTCTCACGTTTGGATCGATCATGTTTCAATGTACAATTGCCAAGACGGGTTAATTGATGCCATTATGGGTTCCACTGCCATTACAATTTCCAATAGTCATTTCACTCACCATAACGAGGTTATGTTATTTGGAGCGAGTGATAGCTATAAGGAAGATTCTGTAATGCAAATAACCCTCGCATTCAACCATTTTGGGAGGGGATTGGTGCAAAGAATGCCAAGGTGTAGATTTGGGTTCTTCCATGTGGTTAATAATGACTATACTCATTGGCTTATGTATGCCATTGGGGGCAGCCAGCACCCCACCATTGTTAGCCAAGGGAACCGTTTCATTGCCCCTCCCAATCCGAGCGCGAAACAGATAACGAAGAGAGAGTATGCAGATGAGTCGGAATGGAAGAATTGGTCATGGCGGTCGGAGGGAGATTTGATGATCAATGGGGCCTACTTTGTTTCGGCGGGGGATCAAACCAAGGGGAAGAAGAGCGGTCTCTCAAGATATGATATGATTAAATTCAAGCCAGGAGCCTACGTGAAAAGGCTTACACGCTTCGCTGGTACACTTGAGTGTCAAGTAGGCAAGCCATGCTAA 1398 47.0 MIPFRALFLCSLLFVVVYANAANAEPEVGKTPDVEFDKINVTDTDTDKGIDLKKADEYWQKRAAEAQKAAQKAFNPNPDSVADNFNAAVGQEIVNSNNSRRSLKRFRGPCLATNPIDRCWRCDPNWDKNRKKLAECPLGFGHQTIGGKRGPIYVVTDASDENLVDPKPGTLRHAVVQNGPRWIIFGRSMIIRLSQELIISSNKTIDARGFNVHIAFGAGLTLQFVHNIIIHGLHIHDIISKSGGMIRDAFDHYGFRTQSDGDGISIFGGSHVWIDHVSMYNCQDGLIDAIMGSTAITISNSHFTHHNEVMLFGASDSYKEDSVMQITLAFNHFGRGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPSAKQITKREYADESEWKNWSWRSEGDLMINGAYFVSAGDQTKGKKSGLSRYDMIKFKPGAYVKRLTRFAGTLECQVGKPC 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3828950 3831239 + CmaCh12G007010.1 Cma12g00701 305191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00701 465 Pfam Pectate lyase 200 379 IPR002022 -
Cma12g00701 465 Gene3D - 113 458 IPR012334 -
Cma12g00701 465 SMART amb_all 188 385 IPR002022 -
Cma12g00701 465 PRINTS Pollen allergen Amb family signature 436 459 IPR018082 -
Cma12g00701 465 PRINTS Pollen allergen Amb family signature 196 212 IPR018082 -
Cma12g00701 465 PRINTS Pollen allergen Amb family signature 160 185 IPR018082 -
Cma12g00701 465 PRINTS Pollen allergen Amb family signature 136 153 IPR018082 -
Cma12g00701 465 PRINTS Pollen allergen Amb family signature 404 428 IPR018082 -
Cma12g00701 465 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Cma12g00701 465 PRINTS Pollen allergen Amb family signature 362 381 IPR018082 -
Cma12g00701 465 PRINTS Pollen allergen Amb family signature 260 281 IPR018082 -
Cma12g00701 465 PANTHER PECTATE LYASE 53 465 - -
Cma12g00701 465 SUPERFAMILY Pectin lyase-like 114 456 IPR011050 -
Cma12g00701 465 Pfam Pectate lyase, N terminus 54 103 IPR007524 GO:0030570
Cma12g00701 465 PANTHER PECTATE LYASE 18-RELATED 53 465 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01634 Cma-Chr4:8245667 Cma12g00701 Cma-Chr12:3828950 0 dispersed
Cma12g00701 Cma-Chr12:3828950 Cma14g00604 Cma-Chr14:3003631 0 dispersed
Cma12g00701 Cma-Chr12:3828950 Cma05g00942 Cma-Chr5:7598769 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00701 K01728 - csv:101217922 721.465